Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02023 ATGAGTGCGAGGAGGACGTTGCCAAACAGGTATGATAAAGAGAAAGGTAGCACAATGTTTGATACCGATAACTCATTACTTTTCTTGGAGACGAGTCTTCCTTTCAAAAAAAGAGGCCAGAAAGAACAGGGCATGAAAAAAGAGCTAAAACACCCAAAACTTGTTCTTAAACAAACTTCAAAAGCATGTGCAGATCTCTGTTTTCAAAATTACATGAATGATCCAGATGCTCCTGGTGGAAAGCTTGTCATGCAGCAACCTCAGGGGTTGGCATCTATTGTGCTTTTTTTCAAAGGACCTCTTGGAAATCTTGAATCTTCACAAGTCACTAGCTGGAATGAGTCACCAGCTGCTGGGGCTAAAAAGAGTGATAATGAGCTAGGAATCCCTTTCCTTGAGACAAGTGCTAAAGACTCAATCAATGTGGAGCAGGCTTTCTTAACTATGGCAGCTGAGATTAAGAAGATGGGAAGCCAACCGACTGTTAGTAAGTCAGCAAAAACTATTCGAATGAAGGGGCAACCAATCCCACATAAAAACAACTGTTGTGGTTAG 555 0.4144 MSARRTLPNRYDKEKGSTMFDTDNSLLFLETSLPFKKRGQKEQGMKKELKHPKLVLKQTSKACADLCFQNYMNDPDAPGGKLVMQQPQGLASIVLFFKGPLGNLESSQVTSWNESPAAGAKKSDNELGIPFLETSAKDSINVEQAFLTMAAEIKKMGSQPTVSKSAKTIRMKGQPIPHKNNCCG* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02023 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 169 IPR027417 -
Rops3g02023 184 Pfam Ras family 119 154 IPR001806 GO:0003924|GO:0005525
Rops3g02023 184 Gene3D - 104 170 IPR027417 -
Rops3g02023 184 MobiDBLite consensus disorder prediction 161 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02023 Rops-Chr3 36557946 36561546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02023 48 86 C2H2 Transcription Factor Family AT2G27100 56.410 5.66e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02023 K07874 - gmx:100796206 102.834