Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02018 ATGCATAAGAGGCAAGTTATTGTTTCAGTTGTTGGAGGCGCAATGGGACATGTGATTCGTGCTCAACGTAAGGGTGCTAGTTCTGTCTTCAAGTCCCACACCCCCCACCGTAAGGGACCAGCCAAGTTCCGCAGTCTCGACTTCGGTGAACGTAACGGTTACCTCGAGGGAGTTGTAACGAATGTGATCCTTGACCCAGGTTGTGGTGCCCCATTGGCAAAGGTCACTTTCCGTCACCCATTCCGTTACAAGAAACAGAACGAACTCTTCTTTGCCGCAGAAGGCATCTACACTGGTCAGTTTATCTACTGTGGTAAAAAAGCTACCCTTATTGTTGGTAACGTCTTGCCACTCCGATCTACCCCTGAAGGTGCCGTTATCTGTAACGTCGAGCACCATGTTGGTGACTGTGGTGTCTTTGCTAGGGCCTCTGGTGATTACGCCATCGTTATCAGTCACAACCCTGATAATGATACCTCTAGGATCAAGCTTCCATCTGGCACTCCGGAGGCACAATTTTTGGTGCAAGCCATAACCAGAGTCTCATGCAAGGAACGTATGTTATCTTTTGCAGCAAATATATGA 585 0.4838 MHKRQVIVSVVGGAMGHVIRAQRKGASSVFKSHTPHRKGPAKFRSLDFGERNGYLEGVVTNVILDPGCGAPLAKVTFRHPFRYKKQNELFFAAEGIYTGQFIYCGKKATLIVGNVLPLRSTPEGAVICNVEHHVGDCGVFARASGDYAIVISHNPDNDTSRIKLPSGTPEAQFLVQAITRVSCKERMLSFAANI* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02018 194 Gene3D - 15 100 IPR012340 -
Rops3g02018 194 SMART Ribosomal_L2_2 25 104 IPR002171 GO:0003735|GO:0005840|GO:0006412
Rops3g02018 194 SMART Ribosomal_L2_C_2 110 193 IPR022669 GO:0003735|GO:0005840|GO:0006412
Rops3g02018 194 PANTHER RIBOSOMAL PROTEIN L2 15 169 IPR002171 GO:0003735|GO:0005840|GO:0006412
Rops3g02018 194 Pfam Ribosomal Proteins L2, RNA binding domain 28 104 IPR022666 GO:0003735|GO:0005840|GO:0006412
Rops3g02018 194 Pfam Ribosomal Proteins L2, C-terminal domain 112 168 IPR022669 GO:0003735|GO:0005840|GO:0006412
Rops3g02018 194 FunFam 60S ribosomal protein L8 104 180 - -
Rops3g02018 194 SUPERFAMILY Translation proteins SH3-like domain 113 168 IPR008991 -
Rops3g02018 194 Gene3D - 104 177 IPR014722 -
Rops3g02018 194 FunFam 60S ribosomal protein L2 15 100 - -
Rops3g02018 194 SUPERFAMILY Nucleic acid-binding proteins 15 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02018 Rops-Chr3 36315119 36315703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02018 15 168 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 87.013 8.77e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02018 K02938 - gmx:547677 287.345