Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02016 ATGAGAGGCGGTGCCAGCTGTGGAGAAATCGTGGAGGTGCAAGGAGGTCACATTGTCCGGTCCACAGGCCGGAAAGACCGACACAGCAAGGTGTGCACGGCGAAAGGCCCACGGGACCGGCGAGTCCGGCTAGCGGCCCACACCGCCATCCAATTCTACGACGTGCAGGACAGATTGGGCTACGACCGACCCAGCAAGGCAGTGGATTGGCTCATCAAGAAGGCCAAGGCCGCCATCGACGAACTCGACGAGCTTCCAGCATGGAACCCCACTGCCACTTGTTCTTCTGCACCACAACCACAACAAGAAGTAAACGAAATGCTCCACCGGCAATCTCCGGTGGAAGAACCAGTAATCGGTTCCAGTAGCCGCACTGGGGCGGGGGGTGGAAGAATACCAGAACAAGAACAATTTCCTTCACAACAATTGAGCAATGATAATGATAACAACAACAGTGGGAAATACAAATACAAATATAACAGTGGTTCTGGTGGTTTTCTTCCATCGTCTTTAGACACCGACATTGCTGACACAATTAAGTCCTTCTTTCCTATGGAGACGTCCACGACGTCGTTTCAGAGTTACCCTCCGCCACCAGATTTGCTGTCCTTAACGGCTGGTGGTGGCACCTCCAGTCAGCAAGATCTGCGGCTTTCATTGCAGTCCTTTCAGGACCCCATTATGCTTCACCACCACCACCACCACCAGGCTCAGAGCCACCACGAGCAGGTACTGTTCGGAACCGCTGCACTTGGCTTCGACGGTGGTTCCTCCACCGGCTGGTCTGGGCAGCAGCAGCAGCATCAGCATCAGCACCAGGAGGAACAAGAGCATGGCCGAATGCATAGAATGGTGGCCTGGAATGCTAATGCTGCAGATGCTGGTAACAGTGGCCATGGCGCTGGGTTTGTCTTCAGCGCTCAGTCTCCGGCTCCGGTGCCGGCGTTTGGTCATGGCCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCAGTTCGTGCTTGGATAGACCCTTCATTCGCGGCGACCCTCGCCGATCACCACCACTATCATTACTTGTCGCCGGCGATTCATTCTGTCACTGGAGGTGGCGTTGGATTTGCCGGCTCCAGTGGCTTCTCCGGCTTCCGTATACCAGCACGAATTCAGGGTGAAGAGGAACACGACGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1227 0.5518 MRGGASCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELPAWNPTATCSSAPQPQQEVNEMLHRQSPVEEPVIGSSSRTGAGGGRIPEQEQFPSQQLSNDNDNNNSGKYKYKYNSGSGGFLPSSLDTDIADTIKSFFPMETSTTSFQSYPPPPDLLSLTAGGGTSSQQDLRLSLQSFQDPIMLHHHHHHQAQSHHEQVLFGTAALGFDGGSSTGWSGQQQQHQHQHQEEQEHGRMHRMVAWNANAADAGNSGHGAGFVFSAQSPAPVPAFGHGQYLSQRGPLQSSNTPSVRAWIDPSFAATLADHHHYHYLSPAIHSVTGGGVGFAGSSGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02016 408 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Rops3g02016 408 MobiDBLite consensus disorder prediction 90 108 - -
Rops3g02016 408 MobiDBLite consensus disorder prediction 90 156 - -
Rops3g02016 408 Pfam TCP family transcription factor 23 135 IPR017887 -
Rops3g02016 408 MobiDBLite consensus disorder prediction 135 156 - -
Rops3g02016 408 MobiDBLite consensus disorder prediction 382 408 - -
Rops3g02016 408 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 330 IPR005333 GO:0003700
Rops3g02016 408 MobiDBLite consensus disorder prediction 256 278 - -
Rops3g02016 408 MobiDBLite consensus disorder prediction 385 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02016 Rops-Chr3 36241964 36243190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02016 4 408 TCP Transcription Factor Family AT1G53230 47.045 1.15e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops3g02016 TCP 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02016 - - mtr:25502512 458.759