Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02011 ATGAGAAGCATTTCAAAAACAGCATGCTTCACTTTCATTCTTTTAGTAGTAGCAGCACTTGAAGCTGAAGGCCTCGTCCTTCACAGCAGTGCTTCTGAGTTCGTTTCTGATGGAGTTGATGATGTTCAACAGGAAAATTCATACCTGTATCTCAAAGAGAGTGAGCCTTCCGGGAAGTACTGTGAGCAAATGTATGGCTTCTTGCCATGTTCCAATAACATTTTGGGTCACCTCTTCCAAATCTTGGTTTATGAGTACTTGTTATTCCATGGAGAATCATACTTGGCTGCTGGAGGAGAGCAGGTCTTCAAGATTCTTGGCCCTGGCGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGTGCCCTTCCTGAGTCTCTGATTCTTCTTGTTACTGGACTTTCAAGTGATAAAGAGAATGCACAAGAGTATGCGTCCACCGGAGTTGGCTTGTTGGCTGGATCATCCATCTTGCTCCTGACAGTAGTGTGGGGAACCTGTGTTATCTTTGGCAGTCAAAAGTTGAAAAATGACCCTATTTCTAGTGACTCTGAAAGCTCAAATTCATCAAGTGGAAAAATAAAAGAGTCATTGACTGATTCTGGCATTATCATTGATCCAGAGACTATGAAGATGGCAACAATCATGGTTTTCTCAGTTATGCCACTCATCATAATGCAGATTCCCACGTTATTCCAGTTCTCTTACATACCAAGCGCAGTGACCTTGATGATTGCTCTTATCGTTGCTTTCATTTTTCTCATCTCTTACTTAATTTACCAGGTTTTTAAACCTCACATAGAGAAAGCGAGATTAGATTATATAAAACATGATGATTTAATATTCAGAATTTTTCAACATGTTCAAAAGAAAACTCTGAAAAGGATCCTAGCTGAGGATGGAGCTCCCAATGTATCAGCCATAGAAGGGTTGTTTGAGCAACTTGATAGCAATGGTGATAATCATATATCAAAATCAGAGCTTAAAAGACTAGTCATGGACATTCACAATGTTAAGGTTGAAGATGCAGAGGAGACAGTTACAAAACTCATTAAAGATCTAGATATTAACCGAGACAATGAAATCAGTGAGAATGAATTTGTAGATGGGTTTACACGATGGATAAACACAAATTTCAGTCAAGCTCCTCACTCCATACCTGTGTCTCATGAAAATCATAAAACATGGGAAGATGTTGAAAAGTTGGTGGAAAATAACCAAAGTACAGGAGTATATGCATGGTTGAAGGCTTTAGGATATGTGGTGCTGGGAATTACTATATTGTCTCTTCTTGCTGAGCCCCTAATAGCAAGTGTCCAGAATTTCTCTGAGGAAGCAGGAATTTCATCATTTTTCATCTCATTTATTTTAGTCCCCCTGGCCACGAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGAGGCAACATTTCTCAAACAATTTATGAGATTTATGGAGCAGTATTCATGAACAATATTCTTGGTTTTGTGGTGATTTCCATTCTTATATATATGCGAGATATCACTTGGCAATTCTCAGCTGATGTACTTGTTGTGGCAATTGTTTGTACTGTTATGGGCCTTACTGCAAGGTATGTACGTGCTATGTCAGTTTCACTAGCTATTGCCAATAAGGACATAAATCATGTGCATAACTCGTGGTTTTCTAAAGACCAGAAAGTTTTGCACAACTTGAATTCTGAACTAAAGCGCAGGAAAAATCAAGTCTTCATTTTGTCAGTTTCTGGCATAATAGGAGCTATTTTGGATAGCAACTCTCGTATTGGCCAAGAGCAAGCAGTGGCTATGAAGATGACATTGGAGGACTTTAATCGTTATAACAATCAGAATTTTACTCTCTACATAAGGAACTCTGAAGGTGATCCTCTTCAGGCTGCTCTTGCAGCTGGAGATCTTATTGATAAGCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGATGAGACATCTTTAGTGGCCGAAATCTGCAGCCAAAAGGGCATACCCCTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCATTGGAGAAGTGGCACTTCCTGCTGCAAGCCTCACCTAACCAATTTATGCAGATGAAAGCTATAACTGAAATTGTTAAGTCTTGGAAACCATATAAGGTTAGCATGATATATGAAGATGGAGATTCATCATCTACTGAAGTTTTATCTCAGCTCTCTGGAGCTCTCATAGAAGTAGGCAAAGAATTGAGCAATGTTCTAGCCATCCCACCTTTAATTTCCTCTTCATTGTCTCAAAAACTTGAGAAGCTAAGAGAAAGACAATGTCAAATCTTTATTGTCCATTTGTCCTTTCCTCTGGCACTACACCTGTTTGAAACTGCAAAGAAAATGAATATGATGGAGGAAGGTAATGTATGGATTACTACTGGTACTTTCACGAGCCTTGTTCATTCCTTGAATGCCTCCACTATCTCCAATATGCAGGGGATTATTGGAGTCCAGAGCTACATCCCAGATCAGTGGCACCAATATGAGAACTTCTATCATAGATTTCGTAAAAAATTTAGCTCAGAGAATTTTGAAGAGTTTAATTATGAACCTGGGATCTTTGCTGCCCAGGCTTATGATGCTGCATGGACTGTGGCTCAGGCAATGAGGGCAACCAACCAAAAAGGGGGTCAACTTCTTCTAGATAAGATTTTGCTTAATAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACCATAAATTAGCTCCAGTACATACTTTTCAGATCATTAATGTGATTGGGAAGAGCTACAGGGAAATTGGGTTCTGGTATGAGGGACTTGGTTTCTCAAAAACTTTTGGCCAAAATGCTTCTTACAGTTCTTCAGTGAAGGAATTAGGAAAAGTGGTTAATCCAACATGTGCTAAACGACTAAGAATTGGTGTCCCCGCTACATCAACATTCAGACAGTATGTCGATGTCATTCAAGATCATTCTAAAAATGTTGTCTCCTTCAAGGGATTTGCCATAGATCTTTTCAAAGAAACCGTAAAAATGTTGCCATACCGTCTGGAATATGATTTCTTTGCCTTCAATGGAACATATGATGAATTGGTGAAGCAAATTTATTACAAGGAATATGATGCGGTAGTTGGTGATGTAGCAATAGTGTCAACACGTTATGAATATGCTTCATTCACTCAGCCCTATACTGACCCAGGAATGGTGATGATTGTTCCTGTTCAATCAGAAGCAGGCAACAGAGCGTGGTTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATACTGATCATCATTCTCTACAATGGCTTTGTTGTATGGATGATCGAAAGAAACCACCGCCCTGAACTTAAGGGCCCTATTCTGCATCAAACAACAACTATACTGTGGTTGGCTTTCGTTTCTCTGTTCTCTTTGACTGGGGACAAGTTACATAGCAGCTTATCAAGGGTGGCAATGGTGATCTGGCTTTTTGTGGCTCTAATTATTACACAGACTTACACAGCTAGTCTTGCCAGCATGTTGACTGTTGAACGGTTTGAACCCACTGTAGACAGCATTAAGCAGCTAAGGAACAGCAATGCCATGGTAGGATATGATAGAGGATCCTACTTGAAAAGATATCTCCAGGATGCATTGGACATCAATGCTGAAAACATCAAGCAATTTGGCTCATCTGAAAATTATGCTGAAGCTTTAAGAAAAACAGAAATAGCAGCTGCCTTCCTTGATGTTCCTGAGGCCAAAATTTTCCTTGCAAATCATTGTAAAGGGTTTGTTCAAGCTGGGCCTACGTACAAAATTGGAGGATATGGATTTGTATTTCCAAGGGGATCTCCATTGCTTCAAGATGTAAACAAAGCCCTACTAAACATATCTGAAAATGGTACACTGCGTGATCTAGAAAACAGTATGCTAGCATCAGAGGAATGTAAAGAAATATACCCAGATGCAGAAACTTCTAGTCTTAGCCCTGGCTGCTTCATGGTGCTCTTCATCTTAACTGGAGGCACTTCAACAACTGCTCTCTTAATTTACATATTTCCTGTGAATTATTTATGCCATGGACAGAGAAGAATCTGGAGTCTGATGATGGCTATCATTAAAAAATGGGGATCTCAAAAGAGACTATTTCTAAGAAGAGTCCACAATGTTGCAGAGTATCCTCTAAACTCTCCCAGCATTTCTAATTTGCAAACTTTAGCTTAA 4227 0.3956 MRSISKTACFTFILLVVAALEAEGLVLHSSASEFVSDGVDDVQQENSYLYLKESEPSGKYCEQMYGFLPCSNNILGHLFQILVYEYLLFHGESYLAAGGEQVFKILGPGVFGASAFDILGALPESLILLVTGLSSDKENAQEYASTGVGLLAGSSILLLTVVWGTCVIFGSQKLKNDPISSDSESSNSSSGKIKESLTDSGIIIDPETMKMATIMVFSVMPLIIMQIPTLFQFSYIPSAVTLMIALIVAFIFLISYLIYQVFKPHIEKARLDYIKHDDLIFRIFQHVQKKTLKRILAEDGAPNVSAIEGLFEQLDSNGDNHISKSELKRLVMDIHNVKVEDAEETVTKLIKDLDINRDNEISENEFVDGFTRWINTNFSQAPHSIPVSHENHKTWEDVEKLVENNQSTGVYAWLKALGYVVLGITILSLLAEPLIASVQNFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKRGNISQTIYEIYGAVFMNNILGFVVISILIYMRDITWQFSADVLVVAIVCTVMGLTARYVRAMSVSLAIANKDINHVHNSWFSKDQKVLHNLNSELKRRKNQVFILSVSGIIGAILDSNSRIGQEQAVAMKMTLEDFNRYNNQNFTLYIRNSEGDPLQAALAAGDLIDKQKVQAIIGPQTWDETSLVAEICSQKGIPLLSLADATPEWALEKWHFLLQASPNQFMQMKAITEIVKSWKPYKVSMIYEDGDSSSTEVLSQLSGALIEVGKELSNVLAIPPLISSSLSQKLEKLRERQCQIFIVHLSFPLALHLFETAKKMNMMEEGNVWITTGTFTSLVHSLNASTISNMQGIIGVQSYIPDQWHQYENFYHRFRKKFSSENFEEFNYEPGIFAAQAYDAAWTVAQAMRATNQKGGQLLLDKILLNNFTGLSGKIQFTDHKLAPVHTFQIINVIGKSYREIGFWYEGLGFSKTFGQNASYSSSVKELGKVVNPTCAKRLRIGVPATSTFRQYVDVIQDHSKNVVSFKGFAIDLFKETVKMLPYRLEYDFFAFNGTYDELVKQIYYKEYDAVVGDVAIVSTRYEYASFTQPYTDPGMVMIVPVQSEAGNRAWLFMKPFTKLMWILILIIILYNGFVVWMIERNHRPELKGPILHQTTTILWLAFVSLFSLTGDKLHSSLSRVAMVIWLFVALIITQTYTASLASMLTVERFEPTVDSIKQLRNSNAMVGYDRGSYLKRYLQDALDINAENIKQFGSSENYAEALRKTEIAAAFLDVPEAKIFLANHCKGFVQAGPTYKIGGYGFVFPRGSPLLQDVNKALLNISENGTLRDLENSMLASEECKEIYPDAETSSLSPGCFMVLFILTGGTSTTALLIYIFPVNYLCHGQRRIWSLMMAIIKKWGSQKRLFLRRVHNVAEYPLNSPSISNLQTLA* 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02011 1408 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 589 1361 IPR015683 -
Rops3g02011 1408 SUPERFAMILY EF-hand 307 375 IPR011992 -
Rops3g02011 1408 FunFam Glutamate receptor 1086 1224 - -
Rops3g02011 1408 Pfam Sodium/calcium exchanger protein 105 257 IPR004837 GO:0016020|GO:0055085
Rops3g02011 1408 Pfam Sodium/calcium exchanger protein 417 536 IPR004837 GO:0016020|GO:0055085
Rops3g02011 1408 Gene3D - 1262 1319 - -
Rops3g02011 1408 CDD PBP1_GABAb_receptor_plant 589 950 IPR044440 -
Rops3g02011 1408 Gene3D - 259 383 - -
Rops3g02011 1408 ProSitePatterns EF-hand calcium-binding domain. 354 366 IPR018247 -
Rops3g02011 1408 ProSitePatterns EF-hand calcium-binding domain. 315 327 IPR018247 -
Rops3g02011 1408 Pfam Bacterial extracellular solute-binding proteins, family 3 1002 1309 IPR001638 -
Rops3g02011 1408 ProSiteProfiles EF-hand calcium-binding domain profile. 302 337 IPR002048 GO:0005509
Rops3g02011 1408 ProSiteProfiles EF-hand calcium-binding domain profile. 341 376 IPR002048 GO:0005509
Rops3g02011 1408 SUPERFAMILY Periplasmic binding protein-like II 972 1309 - -
Rops3g02011 1408 SMART GluR_14 974 1314 IPR001320 GO:0015276|GO:0016020
Rops3g02011 1408 Gene3D - 699 941 - -
Rops3g02011 1408 Gene3D - 1088 1211 - -
Rops3g02011 1408 SMART efh_1 345 373 IPR002048 GO:0005509
Rops3g02011 1408 SMART efh_1 306 334 IPR002048 GO:0005509
Rops3g02011 1408 FunFam Glutamate receptor 970 1085 - -
Rops3g02011 1408 Pfam Ligand-gated ion channel 1310 1343 IPR001320 GO:0015276|GO:0016020
Rops3g02011 1408 CDD GluR_Plant 973 1312 - -
Rops3g02011 1408 Gene3D - 592 922 - -
Rops3g02011 1408 Pfam EF-hand domain pair 307 368 IPR002048 GO:0005509
Rops3g02011 1408 FunFam Glutamate receptor 703 864 - -
Rops3g02011 1408 Gene3D - 982 1087 - -
Rops3g02011 1408 SUPERFAMILY Periplasmic binding protein-like I 588 942 IPR028082 -
Rops3g02011 1408 CDD EFh 307 371 IPR002048 GO:0005509
Rops3g02011 1408 Pfam Receptor family ligand binding region 605 930 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02011 Rops-Chr3 36172215 36185889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02011 589 1353 Ion Channels AT2G29120 31.404 2.84e-121 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02011 - - gmx:100818623 1265.37