Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02005 ATGAGCTCTATGCAAGTTGATGATGTTGCTTTAGTGGATGATGACATTGAGGATATGTCTTATGAGGAGCTACTTGCACTTGGTGAGCGGATTGGCAATGTAAAAATTGAATTATCTGAGGAAATGATTACAAGTCAAATGAAGACAAAAACTTATTTACCACCTGCTGATGCTATTAATTCAGAGGAGGCAGCTTCCGTGGAACAAGAAACTGATTCTTGCGTAATATGCCAAGATGAATATGAGGATGGTGAGAAGATTGGAATTCTTCAATGTGGGCGCGAATATCATGCAGATTGTTTGAAGAAATGGTTACTTGAGAAAAATGTCTTCCCCTTATGCAAATCAGAAGCATTAACTCTTGGAGGAAGCCCAAAATTTTTATCCCCACCCATGCCCACTCTCTATCTCTCTGTATAA 420 0.3905 MSSMQVDDVALVDDDIEDMSYEELLALGERIGNVKIELSEEMITSQMKTKTYLPPADAINSEEAASVEQETDSCVICQDEYEDGEKIGILQCGREYHADCLKKWLLEKNVFPLCKSEALTLGGSPKFLSPPMPTLYLSV* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02005 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 120 IPR013083 -
Rops3g02005 139 FunFam E3 ubiquitin ligase BIG BROTHER 34 119 - -
Rops3g02005 139 ProSiteProfiles Zinc finger RING-type profile. 74 115 IPR001841 -
Rops3g02005 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 15 119 IPR045191 GO:0061630
Rops3g02005 139 SUPERFAMILY RING/U-box 73 120 - -
Rops3g02005 139 Pfam Ring finger domain 72 115 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02005 Rops-Chr3 36146174 36147287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02005 15 119 C3H Transcription Factor Family AT2G15530 47.619 1.84e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02005 K19041 - gmx:100808448 176.407