Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02001 ATGGATCAACATCCGCATCCCTATTATCATTGTGAACATATCCATTTCAGAGGCACTAACATCTCTCAGCCCAATGTCTACACAGTGGTGACAGTTTTAGGGAATACACCTAACCTCAATAACCATTTGATCCTTGATAACCCCTTAATCATTGATGCAACAGGCAGAAGAAGTGGTCTTGGGTTTGCTCATCATCTTCCTGTGAACCCACATTACCATAACTTTCATCCTTCAGTGAGTGCAACTTCACATGGAGTTCCAACAAATCGTTCACACAGTGCTGCAATCCCCATACAGAATGGTTTTGAGATGGATGCCAGACATGTTAACTTTGCAGCATCTACAAGTCGACTACGGGTAGACCAACGTCATAGAGGGGAGACGACTCTTGAACATCAAAATCTTCCTCCTATGGGCTTTGTCCAAGTTGATGACATTGCCTTATTGGTTGACCATAGCAGAGATATACACATGGACATTGAGGATATGTCTTACGAGGCAAGTAAACAAGGGCTTCTTGCATTGGGTGAGCAGATTGGCAATGTAAAGAGAGGTTTATCAGAGGAAATGATTGCAAGTCAAATGATGACAAAGACAGCTGTGGAACAAGAAACTGATTCTTGTGTAATATGCCAGGAAGAATATAAGAAAGGAGAGATGATTGGAATTCTTCCATGTGGGCACAAATATCATGCAGATTGTTTAAGGAAATGGTTACTTGAGAAAAATGTCTGTTCCATGTGCAAATCAAAAGCACTGACTCCTAGAGGGATGGATGTTTGA 783 0.4151 MDQHPHPYYHCEHIHFRGTNISQPNVYTVVTVLGNTPNLNNHLILDNPLIIDATGRRSGLGFAHHLPVNPHYHNFHPSVSATSHGVPTNRSHSAAIPIQNGFEMDARHVNFAASTSRLRVDQRHRGETTLEHQNLPPMGFVQVDDIALLVDHSRDIHMDIEDMSYEASKQGLLALGEQIGNVKRGLSEEMIASQMMTKTAVEQETDSCVICQEEYKKGEMIGILPCGHKYHADCLRKWLLEKNVCSMCKSKALTPRGMDV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02001 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 56 253 IPR045191 GO:0061630
Rops3g02001 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 254 IPR013083 -
Rops3g02001 260 SUPERFAMILY RING/U-box 200 255 - -
Rops3g02001 260 Pfam Ring finger domain 206 249 IPR001841 -
Rops3g02001 260 CDD RING-H2_RNF24-like 206 252 - -
Rops3g02001 260 SMART ring_2 208 248 IPR001841 -
Rops3g02001 260 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02001 Rops-Chr3 36093930 36095053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02001 151 253 C3H Transcription Factor Family AT2G15530 44.643 3.61e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02001 K19041 - gmx:100779069 235.343