Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01997 ATGGGTTCCGTGGAGAACTACCACGTTATCGAGCTTGTCGGCGAGGGTTCCTTCGGTAAGGTCTATAAAGGGAGGCGCAAGCACACGGGACAGACCGTTGCGATGAAGTTCATAATGAAGCATGGGAAAACTGAGAAGGACATTCATAATTTAAGACAAGAAATCGAGATCTTACGAAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAGTTTTGTGTTGTCACAGAATTTGCACAAGGTGAGCTTTTTGAAATTCTTGAGGATGATAAATGCCTTCCTGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAACCGGATCATCCATCGTGATATGAAGCCCCAGAATATTCTCATTGGTGCTGGATCTGTTGTCAAGCTTTGTGATTTCGGGTTTGCTCGTGCAATGTCCGCAAATACCGTTGTCTTGCGATCTATAAAAGGCACTCCATTATACATGGCTCCAGAGCTTGTACGGGAACAGCCTTACAACCACACTGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGGATCCGGTTAAATATCCAGATCACATAAGTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGACAGTCGACTAACTTGGCCTGCTCTTCTTGAACACCCCTTTGTTAAAGAAACCTCTGATGAACTTGATGCCAAGGAATTGTGTGAGATAAGTGGATCACCCAGGGATAGTGATACAACACGGAGGGTTGAAGGAAAAACCATTCAAACTTCAACAGGCAAAAACAATTGCACAACAAGTTTGGAGGAACATGTTGCTTCACCGCTTCAGATTGAAGCTCAGTTAAATGGTCTTAACATAAACAGAACCAATTCTTCAGTGCTTGATGAGTCCCCAGGATTTTCAAATCAAAATGCTATAATAGAGCCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGCACAGTCAAAGGTGCAAAAATACTTGGTCAAGATAATGAAGCGTTGGGACATATTCTGCTACCATTGAAAAAATGGTCAATGGGATCTCAAAATATTTGCAGTGATCAAGACATTCCTGCTTCGAACCAGTCATTGAGGATTCTCTCAAACCTAGTTGCTGCCGGTGCCTTCAGTGCTAGTGGAAGAATTGATGAATTAATCAGTGAACTCCTTGTGTTTACTAGATATATAATAGCCATGAAATCTGCTGAAGTTATTGACTTGATAACAAAGAGTTTCTCCATCACTAAGATTTTGCTAGATAATGGTGGGAGTTGCACTTCAAGCTCTTATTTGAATCACTGGGTTGAATTTGTTGAAATCTATTCTCAGGTTGTAACTTCGACTAATGATGCATCTGGAAGAGTTCTGTATGAGTCTAGTGCCTGCATTACAGTCATGCTGTCAAAAGTTGCTCAGGTGCTTAGATCATCTCCTCAAATTTCAGGCTCAGAGACACTGAATGAAACAGCTAACAGAATTATAGACCATGCAAAAACATCTGGTTTAGTGGACCATTTGTGTTTGTGCTTAGCCACTTCAGGCTCGAGTCTTATTTCAGGTTCTTCCAATATGCTACGGGCTGCTTCAGAAGCATGCAGAGCAGTCTGGTCTTTGATTAATGCACTGGATATCCTTTTTATGAAAAAAAGTGCCATTCTGTTTCCCATAAATGCTATGCGGTGTCATTCTTCACAGAGGATGGAAATTGTAGATCACGGGCAAGATCTTTTCTTTCAAGCAGAATCGACAAAAATTGTTGATGCAATGACAAGAGCATTCCTGAAATCCAAAGCTGTTCAGGTTGCTGTTTACTATTGTTTTCACCAACGTCTTGAGTCTGCAATGAGTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCAGCTCTCCTTTGTGGTCTTCCCAGTTCCCTTCCTGTGACTACTGTTGTCAGTGGAGGGGGTGATGGAACTATTGTTTCAGAGATTTTCTCTGTTTTGTCATTATGCAGTTCCTCTCTCAACAAAGATGCACAGACTGCAGAACCAAGTACCGTTAAATGCAAATTAACAAATCCTTCTGCTCTGGTTCGTTATTCATGTCTCATTCTTGCAATAATTGCACAATGTTTGAAGTCAGCTGGAAGAAATTCAGCAATTTTTATGCTCACTAACTCACCAAAGAAGCAGCTTGCTCGAGTTTCATTGCTTGCTCATCATATTTCTTCTGATGATAAAACAAAATCCTCTTTCCAACCTCAAAGTGCATCATCAGCCATGTTGGCTTTGGCGTCCATTCTAACCCTCGAATCTGGGGCTTTGGTTGAGTCTCCGATATCTGAAATTGCTATGCCCTTAATTCCTCGAACTTCTACACTAAGTGAACATCTTAAATTTTCATCTAGAAATGAAAATGAATCGGACCCTAGCAACTTCAATGGGAAGCTCTCGTATTGGCTAGGGGTGAGAGATGGGTGTGTTGGTCTTTTAGATTCCAGACTAAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCTCTTCTTCTTATTGACTTATTAAGCAATGAGTTTTTAAATGCTTCTCAAGGAAATGAGCACCAAAACGATAGAGTTGGATTATCTCCTATTGGTGTTGTATGGACAATTTCATCATTATGTCATTGTCTTTCTGGTGGTGCTTCTATTTTTCGTCAGATTTTGATTAGAAGTGAACATATTAAGCTCATCTCCAACTTATTATGTGGTGCTCATCTCAATTTGATAAAATGCTGGATGGGACCTGGTGGAGGGAGAGCAGGAGTCAGAGATCTAATAAATGCAGTGATAGATCTTTTGGCATTTCCTTTTGTTGCTCTGCAAAATGCCCCTGGTTTGCCATCAGCCACTGCTTCTGTCAGCAGTGGGTTTCTTCTTAATGTTGGTTCCCCTGGTCAGAGACTATGCATGGAAGACAAGGATATTGTTAAGGCAATAGAAGAAGACTTGGGCAGATACATTAAGATCCTTGTGGAGGTAGGTGTGCCTGGTATTATCCTTCGATGCCTAGATCATTTGGAGTTGAATGATTTGGGCAGGCCTGTGGCTTTTCTCGCTAAAATGGTATGCCACCGACCTTCAGCAGTTCAGCTTGTCCGTGAAGGTCTTTTGGATCCAAATAGGATGAGAAGGTTGTTTGACTGTTCGGGTCCCAAAGAGGTCGCACTGGATGCTCTTATGATAATTTCTGATCTTGCTCGCATGGACAAGGGATTCTATGAGTACATTAAAGGTGCTTCTATTTTGGAGATCTTAAAAGGTTTTCTTTCACATGAGGATCCCAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGCCACAGCGCCTACTTCTATAGTTCACTTGCAAGGCATCAAATTGTCAGTATCCTTATTGATCGGTGTTCAGATCCAGACAAACGAACACGGAAATTTGCTTGTTTTGCGATTGGAAATGCAGCCTATCACAATGACGTGTTGTATGAAGAGCTGAGGAGATCGATTCCTCAATTGACTAATTTGTTGCAAATGGCTGAGGAGGACAAGACTAAAGCAAATGCAGCAGGAGCACTTAGCAATCTGGTTCGCAACTCTGACAAACTTTGTGAAGACATCGTGTCAAAAGGAGCGATTCAGTCTTTGCTGAGGTTAATTTCCGATTGTGCGGTATCAGCACTAAATCCAAGCAGAAATGATTCAACAAGCGAATCTCCTTTAAAGATAGCTCTCTTTTCCCTGGCAAAGATGTGTGCACATCCACTTTGCAGACAGTTCATCCGTTCATCACCTTTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGCCTCCGTGATCATTAGCAAAGTTGCTGACCCTTGA 4032 0.4149 MGSVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDHISPNFKSFLKGLLNKAPDSRLTWPALLEHPFVKETSDELDAKELCEISGSPRDSDTTRRVEGKTIQTSTGKNNCTTSLEEHVASPLQIEAQLNGLNINRTNSSVLDESPGFSNQNAIIEPGCQRLDRLENNSRTVKGAKILGQDNEALGHILLPLKKWSMGSQNICSDQDIPASNQSLRILSNLVAAGAFSASGRIDELISELLVFTRYIIAMKSAEVIDLITKSFSITKILLDNGGSCTSSSYLNHWVEFVEIYSQVVTSTNDASGRVLYESSACITVMLSKVAQVLRSSPQISGSETLNETANRIIDHAKTSGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAVWSLINALDILFMKKSAILFPINAMRCHSSQRMEIVDHGQDLFFQAESTKIVDAMTRAFLKSKAVQVAVYYCFHQRLESAMSCGLQLLSRCCLHSGIVPALLCGLPSSLPVTTVVSGGGDGTIVSEIFSVLSLCSSSLNKDAQTAEPSTVKCKLTNPSALVRYSCLILAIIAQCLKSAGRNSAIFMLTNSPKKQLARVSLLAHHISSDDKTKSSFQPQSASSAMLALASILTLESGALVESPISEIAMPLIPRTSTLSEHLKFSSRNENESDPSNFNGKLSYWLGVRDGCVGLLDSRLKWGGPLAVQQLCASGIPLLLIDLLSNEFLNASQGNEHQNDRVGLSPIGVVWTISSLCHCLSGGASIFRQILIRSEHIKLISNLLCGAHLNLIKCWMGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNVGSPGQRLCMEDKDIVKAIEEDLGRYIKILVEVGVPGIILRCLDHLELNDLGRPVAFLAKMVCHRPSAVQLVREGLLDPNRMRRLFDCSGPKEVALDALMIISDLARMDKGFYEYIKGASILEILKGFLSHEDPNMRAKACSALGNMCRHSAYFYSSLARHQIVSILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRRSIPQLTNLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAIQSLLRLISDCAVSALNPSRNDSTSESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIISKVADP* 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01997 1343 Coils Coil 1211 1231 - -
Rops3g01997 1343 Gene3D Transferase(Phosphotransferase) domain 1 2 323 - -
Rops3g01997 1343 Coils Coil 41 61 - -
Rops3g01997 1343 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01997 1343 MobiDBLite consensus disorder prediction 272 298 - -
Rops3g01997 1343 FunFam Serine/threonine-protein kinase 36 4 318 - -
Rops3g01997 1343 FunFam Serine/threonine-protein kinase TIO 1070 1339 - -
Rops3g01997 1343 SUPERFAMILY ARM repeat 1103 1337 IPR016024 -
Rops3g01997 1343 SUPERFAMILY Protein kinase-like (PK-like) 5 297 IPR011009 -
Rops3g01997 1343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops3g01997 1343 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01997 1343 FunFam Aurora kinase A 2 89 - -
Rops3g01997 1343 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
Rops3g01997 1343 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01997 1343 PANTHER PROTEIN KINASE RELATED 4 1340 - -
Rops3g01997 1343 SMART arm_5 529 579 IPR000225 GO:0005515
Rops3g01997 1343 SMART arm_5 1206 1246 IPR000225 GO:0005515
Rops3g01997 1343 SMART arm_5 1247 1301 IPR000225 GO:0005515
Rops3g01997 1343 SMART arm_5 1123 1163 IPR000225 GO:0005515
Rops3g01997 1343 CDD STKc_STK36 5 257 - -
Rops3g01997 1343 Gene3D - 1067 1340 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01997 Rops-Chr3 35965628 35982461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01997 4 246 AGC Kinase Gene Family AT3G08720 38.367 1.23e-45 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Rops3g01997 Pkinase 1.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01997 K06228 - gmx:100792102 2267.27