Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01994 ATGGGAAACAAATTAGCAATTCAACCCAAACTTGAAGAAACAGAGGACTCAACTTCAGCTAAAATCTTTTTAAGGAATAAAGTGATGTCCTTAAGGGACCAAATTGTTCATGTTTTGGCTCAATGCTATTATAAAAGTGGGTTGCGTGCTTATGATTGTGACAATGATGGCATGCAAGATGGCATATTGGAACTCATAGGAGACCATCTTTTTGACCAGCGGAAGCAAAGACATCAAAAGCAACAAAAGGTCTTCTCTAGTCTAGAAGGGCTTAGAAAATTCACATTCCCAACAACCCTTGGTTTGTTGTTTGTTCCACATGGCGAAAAAGAGGCCAGGCAAAAAGAACTTGGAGTCGTACACCATCAGAGGTGCCATTATTCTTGGTTTGTTGCTGCTCGTGCTCCACATTGGGTGATGGTTGTCCCTGCACAATATCAAACTCGGCTTTGCATGGATGGGGGCTGGTTGCTATGGAAATGTTCTACTCTTTTTGTACTCACTAGGCCACACGAAACCCACACCATCACTCTCATTAGCAAACCAGATCATCATTTGGCTTCAGCTCCTATTCAAGGTCAATATTGGATCCCTTCTCCTGCTCAAACCCTTATTGGACCAACCCAGTTCTCTTGCACAGTTTGCAACAAAATGTCCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCTGAATCATTGAGGGGAGCAAAACCAGCTTCATCAATGCTGAGGCTTCCTTGCTATTGCTGTGCTGAAGGTTGCAAGAACAACATAGATCATCCAAGATCGAGTCCACTGAAGGATTTCGGGACCCTTCAAACACACTACAAGAGGAAGCATGGAGCAAAGCCGTTCGGGTGCAGAAAGTGTGGGAAACCTTTTGCAGTAAGAGGAGATTGGAGAACGCATGAAAAGAACTGTGGGAAACTTTGGTTCTGCATTTGTGGTTCTGATTTCAAACACAAAAGATCCCTCAAAGACCATGTCCGTGCCTTTGGTGATGGCCACGCTCCACACACCGTGGAGAGTTGTGATCAGTTGGGAGAAGAACAAGAATTATTAGATGATAGAGAGGACTACACTCCACTCATGTTAGCAGTAAGGGAAGGCCATGCATCCATTTACGAGCTTCCAATTTCATACGGTGCTCATTGTAATGCTAAAAATTTTAGAGGGGAAACTGCACTTTCACTTGCGAGGAAATTCGCAGGAGGGAAAAACGATGCAGAGGCTATTATACTTGATGAACTTGCACGTAAATTGGTATTGGTTGGTGCCTATGTTCAGAAACACACCAAATGTGGGAAGGGCACCCCACATGTGAAACAAATTCAGATGTTGGGCTCTGCAGGTGTGCTACATTGGGGGAAGTCAAGTCGGAGAAATGTGATGTGCTGTGAGGAAGAGTCAGGACCAAGCTCTACATTACGTAGAAATAGGTACAAGAAAGGTGATGCAAATGAGCCGTGCGACTCCCTCAAAGCTCCACGCGACGTGTCCCAACCTCATGGGTCAAAGTTGTAG 1554 0.4459 MGNKLAIQPKLEETEDSTSAKIFLRNKVMSLRDQIVHVLAQCYYKSGLRAYDCDNDGMQDGILELIGDHLFDQRKQRHQKQQKVFSSLEGLRKFTFPTTLGLLFVPHGEKEARQKELGVVHHQRCHYSWFVAARAPHWVMVVPAQYQTRLCMDGGWLLWKCSTLFVLTRPHETHTITLISKPDHHLASAPIQGQYWIPSPAQTLIGPTQFSCTVCNKMSNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSSPLKDFGTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQLGEEQELLDDREDYTPLMLAVREGHASIYELPISYGAHCNAKNFRGETALSLARKFAGGKNDAEAIILDELARKLVLVGAYVQKHTKCGKGTPHVKQIQMLGSAGVLHWGKSSRRNVMCCEEESGPSSTLRRNRYKKGDANEPCDSLKAPRDVSQPHGSKL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01994 517 FunFam Zinc finger protein WIP2 264 346 - -
Rops3g01994 517 SUPERFAMILY beta-beta-alpha zinc fingers 281 315 IPR036236 -
Rops3g01994 517 Pfam Ankyrin repeats (many copies) 365 409 IPR002110 GO:0005515
Rops3g01994 517 ProSiteProfiles Ankyrin repeat region circular profile. 368 399 - -
Rops3g01994 517 PANTHER ZINC FINGER PROTEIN WIP2 184 361 IPR043584 GO:0003700|GO:0010468
Rops3g01994 517 Gene3D Classic Zinc Finger 253 342 - -
Rops3g01994 517 MobiDBLite consensus disorder prediction 483 502 - -
Rops3g01994 517 MobiDBLite consensus disorder prediction 477 517 - -
Rops3g01994 517 Gene3D - 347 454 IPR036770 -
Rops3g01994 517 ProSiteProfiles Ankyrin repeat profile. 368 400 IPR002110 GO:0005515
Rops3g01994 517 SUPERFAMILY Ankyrin repeat 358 412 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01994 Rops-Chr3 35834995 35840666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01994 192 351 C2H2 Transcription Factor Family AT1G13290 88.199 9.17e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01994 Ank_5 1.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01994 - - aprc:113870355 390.963