Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01993 ATGGTGACAACTTCAGGGAACCATTTTATCGATGACCATTTGATCCTTGATGCAGCTGGCAGCAGAGGTGACCCTAGGTTTCCTCATCCTCCTATTTCCAGCCCACTGCATCATGGTTTTCATCGTCAGATCCTGCCAGTGCAATTCCATCATCCTCGGTTACCTGCTGATGGTTTTGCTGTGGGTTCCAGAGGCTCAGCACTTCCACCATTATACCGACACATGCTGGAGACAACTCTTAGAAATCAAAATTTTGGTCCCATGGGTTTTATCAATGTTGATGATGTCACTTTACTGGTTGGCCATCGCAACGATATGCGTAACGACATTGAGGATATGTCTTATGAGGAACTTCTTGCATTGGGTGAGAGGATTGGCAATGTAACTACGGGTTTGTCAGAGGAAATGATTGTAAGTCAAATGCTGACAAAGGCAGCTTCTGTGGAACAGGAAACTGATGCATGTGTAATATGTCAGGAAGAATATAAGAAAGGAGAGAAGATTGGAATTCTTCAATGCAGGCATGAATATCATGCAGATTGTTTAAGGAAATGGTTACTTGAGAAAAATGCCTGTCCCATGTGCAAATCTGAAGCATTGATTCTTGGAGGAAACAGAGTATAA 624 0.4295 MVTTSGNHFIDDHLILDAAGSRGDPRFPHPPISSPLHHGFHRQILPVQFHHPRLPADGFAVGSRGSALPPLYRHMLETTLRNQNFGPMGFINVDDVTLLVGHRNDMRNDIEDMSYEELLALGERIGNVTTGLSEEMIVSQMLTKAASVEQETDACVICQEEYKKGEKIGILQCRHEYHADCLRKWLLEKNACPMCKSEALILGGNRV* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01993 207 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Rops3g01993 207 SUPERFAMILY RING/U-box 154 201 - -
Rops3g01993 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 200 IPR045191 GO:0061630
Rops3g01993 207 CDD RING-H2_RNF24-like 153 199 - -
Rops3g01993 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 200 IPR013083 -
Rops3g01993 207 SMART ring_2 155 195 IPR001841 -
Rops3g01993 207 Pfam Ring finger domain 154 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01993 Rops-Chr3 35825818 35826774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01993 102 200 C3H Transcription Factor Family AT2G15530 54.206 2.16e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01993 K19041 - gmx:100779069 227.639