Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01992 ATGGTGACAACATCAGGGAACCATTTTATCCTCGATGACCATTTGATCCTTGATGGAGCTGGCAGCAGAGGTGACCCTAGGTTTCCTCATCCTCCTATTTCCAGCCCACTGCATCATGGTTTTCGTCATCAGATCCTGCCAATGCAATTCCATCATCCTCGGTTACCTGCTCATGGTTTTGCTGTGGGTTACAGAGGCTCAGCACTTCCACCATTATACCGACACATGCTGGAGACAACTCTTAGAAATCAAAATTTTGGTCCCATGGGTTTTATCAATGTTGATGATGTCACTTTACTGGTTGGCCATCGCAACGATATGCGTAACGACATTGAGGATATGTCTTATGAGGAACTTCTTGCATTGGGTGAGAGGATTGGCAATGTAACTACGGGTTTGTCAGAGGAAATGATTGTAAGTCAAATGCTGACAAAGGCAGCTTCTGTGGAACAGGAAACTGATGCATGTGTAATATGTCAGGAAGAATATAAGAAAGGAGAGAAGATTGGAATTCTTCAATGCAGACATGAATATCATGCAGATTGTTTAAGGAAATGGTTACTTGAGAAAAATGCCTGTCCCATGTGCAAATCTGAAGCATTGATTCTTGGAGGAAACAGTGTATAA 627 0.4258 MVTTSGNHFILDDHLILDGAGSRGDPRFPHPPISSPLHHGFRHQILPMQFHHPRLPAHGFAVGYRGSALPPLYRHMLETTLRNQNFGPMGFINVDDVTLLVGHRNDMRNDIEDMSYEELLALGERIGNVTTGLSEEMIVSQMLTKAASVEQETDACVICQEEYKKGEKIGILQCRHEYHADCLRKWLLEKNACPMCKSEALILGGNSV* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01992 208 SUPERFAMILY RING/U-box 155 201 - -
Rops3g01992 208 SMART ring_2 156 196 IPR001841 -
Rops3g01992 208 Pfam Ring finger domain 155 197 IPR001841 -
Rops3g01992 208 CDD RING-H2_RNF24-like 154 200 - -
Rops3g01992 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 34 201 IPR045191 GO:0061630
Rops3g01992 208 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Rops3g01992 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 201 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01992 Rops-Chr3 35780665 35781621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01992 103 201 C3H Transcription Factor Family AT2G15530 54.206 2.50e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01992 K19041 - gmx:100779069 223.787