Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01989 ATGCGTGAATCGGGTTCGTCATTGGAGAACACGAAGGTTGGTCGATCGGGTTTGCGGCTTCGGAAGAAACACAAGAGATTGGATGCAATATGTGAAGAAGAGTACAATCGAAACCATGGTGAAATCAATGATGGTGGTGGTAATGGTGATGGTGATGGTGATGGTGATGGAGGGGTTCGGCGTAGCTCTCGAGTTCGGCGTGCCCCGGTTCTTCTCGATGCCTCTCCCACTCCCTCGAAGAAACGGCGGAGGCTGAGCAAGAGTGGTGTGAAGGATGCCAAAAGTGTGGAACGGGGTTCTGGGGGTTCTGGTGGCGCCGAGGTTTCGAGAATGTGGAGTTCGAGATTGAGATCGAGGGATGGAAGTGTAGGTTTTAGGGTGAATGAGGAGGAGGAGGAGAGGGAATTGCCACGTATGAAAAGGAAGCTTTTTGAGGATGATGTTGGAAGCAGGGGTGCTGATGAGGTGGAGGTTAAGGAGGTTGATAAGAAAGAGGAATTGGAAGGTGTGATGCCGAAAATAGTTAAGTCGAAGAGACCTGGGAGGATCAAAGCCACGAAGCGCGAAGAGGGACATAAAGATAAGGAGAAAGAGGCTCGGGTGAATTTAGATGAGATCAATAGTCAAGAAGTGGAGGTTGCATTGAACAAAGATGAGGAGAGTGCTTCAGTTCACGAGGAAACACAGTTGTCTGGTGGGAATCAGATAGAAACATTGGATGGGAATGCCACTATAGAGAATCAAGAGAGAGAACTATCTAACAATGTGCAAATGGAGGAGTGTGATGACAGCACTGAACTGTCACCAGTGGAACTTGTAGATAAACATGTTGATGATCATTTAGAGACAGCAAAGGAAGGAAAAAATGCAAGCAATGTTGCAGAAGTTGCTGGAATTTTGACAGGAATTAGAGAAAATGAAGTATCTGCTGATAAGGAGGTTGACATTGATGAAAAAACCTTACAAGATGAAAATATTGTGAGGATGAATGAGTCCAAGGAAGCATCAAATGATAAGCCTCGCCACCAACGTATTAAAGAGGGTAGGCGGTGTGGTTTGTGTGGTGGAGGTATTGACTGTAAACTTCCAAAAAGATTAGTTCACGATAATGGTGAGAGTGAGAATGAGGCATATAGTGGGTCTTCAGCTTCGGAGGAGCCTAATTATGATATCTGGGATGGCTTTGGTGATGAACGTGGATGGTTGGGGCGCCTCTTGGGTCCTATTAATGATCGCCATGGTATTGCTCGAATATGGGTTCATCAGAACTGTGCTGTATGGAGTCCAGAGGTTTACTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGGGCTGCCCTGTGTAGAGGAAGAGCATTGAAGTGCACACGATGCGGGAGGCGAGGAGCTACCATTGGTTGTCGAGTTGATCGTTGTCCAAAAACATATCACTTGCCTTGTGCAAGGGCAAATGGCTGCATCTTTGATCATCGTAAATTTCTTATAGCCTGCACCGATCATCGGCATCTCTTCCAACCTCACGGTAACAAATATTTAGACCGGATAAAAAAGTTAAAGGCTAGGAAAATGAAGTTGGAGATAAGGAAGCTTTCAAATGATGCTTGCAGAAAGGACATTGAAGCAGAAGAGAGATGGTTGGAAAATTGTGGTGAGGATGAAGAATTTTTGAAACGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTGTACATTGGTGGTTCAGACTCTTCCAGTGAAAAATCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCGGTGTATGAAGGAAGTTGTTATTTTACCTCTACTATATCCTGAGTTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTGTTGCATGGATATCCTGGAACTGGGAAAACCCTAGTGGTCCGGGCATTAATAGGTGCATGTGCTTCTAGTGATAAACGGATTGCTTATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATATGTGGGTGATGCTGAGCGACAACTAAGACTATTGTTTCAGGTTGCCGAGAGATGCCAACCTTCTATAATATTTTTTGATGAGATAGATGGACTGGCACCTGTCCGAACTAGGCAGCAAGATCAGACGCATAGTTCTGTTGTGTCAACATTACTTGCTCTTTTAGATGGTTTAAAATCTAGGGGTTCAGTTGTAGTCATAGGTGCAACAAATCGTCCTGATGCTGTTGACCCGGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTATTTTCCATTGCCATCAATTAAGGACAGAGCTGCTATTCTATCACTTCACACACGGAGGTGGCCAAAACCAATTGCCGGATCCTTGCTTGAGTGGATTGCAAGAAAAACTCCTGGTTTTGCTGGTGCTGATCTCCAGGCTCTCTGTACTCAAGCGGCAATCAATGCTTTGAAGAGGAATTTCCCTTTGCAAGAAGTGCTATCTGCAGCTCAAGAGAAAGATTCTAGTTGTAAGAACATTCCTCTTCCATCCTTTGCGGTGGAGGAGAAGGATTGGTTGGAGGCTTTATCGTGTTCCCCACCACCATGCTCCCGGAGAGAAGCTGGAAATGCTGCTAGTGATGTAATATGCGCCCCTCTTCCCATCCACCTTATTTCGTGTTTGTTGCGGCCATTATGCACTCTTCTCATATCTCTTTTTCTTGATGAATGCCTATGGTTGCCACCTCCTATATCTAGAGCTGTAACAATAATTAAGAATGTGATGATTTCTGCTTTGGACAAAAAGAAAATGCTGATTGATCATTGGTGGTTGCATGTTGATAAGTTCCTTCAAGAAGCAAATATTGCTGCTGAGCTTGAGAGGAAGCTCACTTGTTCTGGCATTTTGTCTGCTGAAGATGGTTTTGCTGGTTCGCTTGGTGGTGTGGATGATACTGATGATAACAGGGTGAAATTTGAACCCTCTATAAAGCACAATGTTGGCATGTGCAGTGGTTTGTCATTTGCATTGCCTAGCAAATCAGGATTTCGAATATTGATTGCTGGAAATCCCAGATCTGGCCAGAGACATCTTGCATCTTGCCTTCTTTACTGCTTTATTGGGAATATTGAAATTCAGAAGGTTGATATGGCAACTATTTCTCAAGAAGGACATGGAGATGTAGTACAAGGGATTGCACAAATATTAATGAAATGTGCTAGCGTGCAATCATGTGTAGTATTCATGCCAAGAATAGATTTGTGGGCTGTAGAGACACATTACCAAATTTCTAAAAACACCAATTCCAGCTCAACAAATAATCTATCTCCTAATATGGAAAAGTCTTGTTTCAAACCAAGCCAAGTTGCTGAGAAGGCAAACACATTGAATTCAGAGAAAAACAAGTCAGCAGAAATGGCCAATGGCCAAGCCAGCAGAAGGGCTTCACATGCCTGGATGTCATTCATTGAGCAGGTGGAATCCATTGGTGTATCCACATCATTGATGATTCTGGCTACCTCAGAAGTTCCTTATACTGAACTTCCCTGTAAAATAAGGGAATTCTTCAAGACTTATCAGTCAAAATACAACCAAACAACTCCTTTGGAACTGACAGTTCCTCAATTCTCTCTGCATATTGATGGGAAATTTGATCAGGAGGTGGTGATCAATCAATCTGCAGTAGAGCTATTGAGAAATTTAGTTGAGCAGCAGATTCAATTGATTCATCAGAGATCTCGTATTCATATGAGTGCTCGAAGGGGATACAGTACCTCTGATTCTATTGAAGCTTGTAAAGATAGAGTAATTCAGAGAAACAATAATGGATCAGCCAATGAGAAGAAAGGTGAAATGCAACTTTCCGAATCCTCTACAATAGTTCCAGCACCACCCAGTAGTAGGTCACTGAAGGGAAAGTCAACCCTGTTGTTGGCAATATCCTCATTTGGGTATCAAATTCTTCGATACCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGATGGTCCTTGTGCCGATGTAAGTGGACCTTGGAAGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAGTAATTCACAAGACAAGGTCACGGTTTCTTGTACCTCTAGTGGCACGAAAAGCAAAGAAAGATCTGGTGTAGTCAGAGGCTTGGTTGCTGTTGGTTTATCCGCTTACAGAGGTGCTTACACTTCTGTTAGGGAAGTTTCCCTTGAGGTACGGAATGCTCTTGAGATCTTGGTTGGGCAAGTCAATACCAAAATTCAAGCTGGGAAAGACAAATATCAATATCTTCGCATTTTATCGCAAGTGGCTTACCTGGAAGATATGGTTAATAACTGGGCCTATTCATTGCTGAGTCTAGAGCAGGATTCCCCAGAGCTTGGGACAAAAGTTGTGCCAGAAGGTGTTAGGTCATTGAACAGCCATCCTGCATGTGAGGATCACCAAGCTGAAGGTGCCGATTGCCATTTGGTTGTTCCTATGGACAATGATGGTTTGGAGGTGCACGAGAGAAGTTGTAAGGGAATTCCTGCTGAAACAACTGGATGTCAAACCTTGATTGACAGAAATGATGATTTAAATAATCTTCATCATGATGATAGCAATGCAAATTCTAAAGGATCTCTTCAAAACCATTCCTTTTCAGATAAGCATGTTGACAACTCTTCTACTGTAAACCCACCTGTTGATCCATCCATAAATCAGGAAAATGGGACACCAACCGTAAAATTTGCAGAGGTGAGTGGAGAATTTGGGTCTGCGATAGACTTGAATGAATCTGTACTCACTTCCTCTGTTTCCCTTTCTAAAAATGGAGAATGTGGGTTGTCAAAAGATTTGAATAAACCTACATCTACTCACCCTGCTACCCTTTTTGAAAATGGACTTCATAGTGCCTCTGAACCAGAGGGTGTTAAAATTGGTAACTCCAAGACAGTTTCTAATCTGTCCCTCAACTCATCATCAGTTGACACTGGTGTTAATTTTATTGATGATAACTCTGGTAAAGATGAGAATGCTATAGACATTAACATCCCTTCAAGCGAAGGCAGTGATCCTGCTGAATCTGGGGTTATTTGTTTATATCGATGTTGCCCTCAATGTCTATACAGTCTCTATAATTTGACAAGGAAATTACTTGTTAATGAATGTGGGTTGAACAATAGCCAATTGACAGTGGAGGATGTCCATGATGCTGTGGCATCACTATCTGTGGATCTTATTTCAGCTGTTAGAAAATTCAATCTGGCCAAAGATTTCACTGATAAAAAGCATGGGGCATCTTCAAACCTGAGAACTTGTGATCCAAGAAACCCAGGAGAGGCAGCTGAATGTGTTTCTCACTCAACAAGCCTTCATACAGATGCAAACAAAGATATGGCACTGAATGAATCACTGAAGCTTGATTTTAAATTTATTTTCAGAGATGGTGTACTTATTCATATGGACCCAGATAAGGATGTCTCTTTTCATTGTAAATTTGAGACCTTTTGCCTTTGTTCTGTTAGAGAGTTGATAGTAATGACAAAGCGCCCTTTTGATTGA 5532 0.4261 MRESGSSLENTKVGRSGLRLRKKHKRLDAICEEEYNRNHGEINDGGGNGDGDGDGDGGVRRSSRVRRAPVLLDASPTPSKKRRRLSKSGVKDAKSVERGSGGSGGAEVSRMWSSRLRSRDGSVGFRVNEEEEERELPRMKRKLFEDDVGSRGADEVEVKEVDKKEELEGVMPKIVKSKRPGRIKATKREEGHKDKEKEARVNLDEINSQEVEVALNKDEESASVHEETQLSGGNQIETLDGNATIENQERELSNNVQMEECDDSTELSPVELVDKHVDDHLETAKEGKNASNVAEVAGILTGIRENEVSADKEVDIDEKTLQDENIVRMNESKEASNDKPRHQRIKEGRRCGLCGGGIDCKLPKRLVHDNGESENEAYSGSSASEEPNYDIWDGFGDERGWLGRLLGPINDRHGIARIWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHLFQPHGNKYLDRIKKLKARKMKLEIRKLSNDACRKDIEAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSSSEKSFQGWESVAGLKDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGYPGTGKTLVVRALIGACASSDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPVRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSIKDRAAILSLHTRRWPKPIAGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSAAQEKDSSCKNIPLPSFAVEEKDWLEALSCSPPPCSRREAGNAASDVICAPLPIHLISCLLRPLCTLLISLFLDECLWLPPPISRAVTIIKNVMISALDKKKMLIDHWWLHVDKFLQEANIAAELERKLTCSGILSAEDGFAGSLGGVDDTDDNRVKFEPSIKHNVGMCSGLSFALPSKSGFRILIAGNPRSGQRHLASCLLYCFIGNIEIQKVDMATISQEGHGDVVQGIAQILMKCASVQSCVVFMPRIDLWAVETHYQISKNTNSSSTNNLSPNMEKSCFKPSQVAEKANTLNSEKNKSAEMANGQASRRASHAWMSFIEQVESIGVSTSLMILATSEVPYTELPCKIREFFKTYQSKYNQTTPLELTVPQFSLHIDGKFDQEVVINQSAVELLRNLVEQQIQLIHQRSRIHMSARRGYSTSDSIEACKDRVIQRNNNGSANEKKGEMQLSESSTIVPAPPSSRSLKGKSTLLLAISSFGYQILRYPHFAELCWVTSKLKDGPCADVSGPWKGWPFNSCIIRPSNSQDKVTVSCTSSGTKSKERSGVVRGLVAVGLSAYRGAYTSVREVSLEVRNALEILVGQVNTKIQAGKDKYQYLRILSQVAYLEDMVNNWAYSLLSLEQDSPELGTKVVPEGVRSLNSHPACEDHQAEGADCHLVVPMDNDGLEVHERSCKGIPAETTGCQTLIDRNDDLNNLHHDDSNANSKGSLQNHSFSDKHVDNSSTVNPPVDPSINQENGTPTVKFAEVSGEFGSAIDLNESVLTSSVSLSKNGECGLSKDLNKPTSTHPATLFENGLHSASEPEGVKIGNSKTVSNLSLNSSSVDTGVNFIDDNSGKDENAIDINIPSSEGSDPAESGVICLYRCCPQCLYSLYNLTRKLLVNECGLNNSQLTVEDVHDAVASLSVDLISAVRKFNLAKDFTDKKHGASSNLRTCDPRNPGEAAECVSHSTSLHTDANKDMALNESLKLDFKFIFRDGVLIHMDPDKDVSFHCKFETFCLCSVRELIVMTKRPFD* 1844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01989 1843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 502 IPR013083 -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 1 113 - -
Rops3g01989 1843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 854 IPR027417 -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 1264 1291 - -
Rops3g01989 1843 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 346 502 - -
Rops3g01989 1843 PANTHER AAA DOMAIN-CONTAINING 15 1752 IPR045199 -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 183 198 - -
Rops3g01989 1843 Gene3D - 587 863 IPR027417 -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 25 40 - -
Rops3g01989 1843 Pfam AAA+ lid domain 787 819 IPR041569 -
Rops3g01989 1843 ProSitePatterns AAA-protein family signature. 731 749 IPR003960 GO:0005524|GO:0016887
Rops3g01989 1843 FunFam ATPase family, AAA domain-containing 2 585 768 - -
Rops3g01989 1843 Pfam PHD-like zinc-binding domain 421 500 - -
Rops3g01989 1843 Pfam ATPase family associated with various cellular activities (AAA) 626 761 IPR003959 GO:0005524|GO:0016887
Rops3g01989 1843 Gene3D - 762 854 - -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 1529 1568 - -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 179 198 - -
Rops3g01989 1843 ProSiteProfiles Extended PHD (ePHD) domain profile. 390 500 IPR034732 -
Rops3g01989 1843 MobiDBLite consensus disorder prediction 1523 1568 - -
Rops3g01989 1843 SMART AAA_5 622 763 IPR003593 GO:0016887
Rops3g01989 1843 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 762 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01989 Rops-Chr3 35708764 35718787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01989 618 846 Calmodulin-binding Proteins AT3G56690 38.428 2.08e-42 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01989 - - lja:Lj3g3v0428950.2 2659.4