Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01982 ATGGAGGATTTCATCTTTCCCTTCAAGACTCAAGAGCACAGAGCAAAACACAACAAGAAGAGGCTAAATGAAGACCAAGTAGCCATCCTAGAGAACTGTTTTGCCTCTAACAAGAGGCTTGAACCAAAGCAGAAGTACCAGCTGGCAAATCAACTTGGTGTCCCTCCAAGACAAATTGCAATTTGGTACCAAAACAAAAGAGCTCGGTGGAAGACACAGACCCTTGAGAGGGACTATAATGCTCTTCAATCAAATCTAGAGAATGTGTTGGCTGAAAAGGAGAAGCTAGAGAGAGATGTGGAAAGGCTCAAAGCTGAGCTGAAGAAGGCTCAAGAGATGTTGCTATTAAGCATGAAAGGTGGTGGAGAATATAATGCTGGTTCTTTTGAAGAGGGAGGGAGCTCAGGGTTGCATCATGATGATGCCACTGGGTTTTGGCAAAGTGGTGAGGTTATGCAGGTTGAGGAGCTTTGTGCTTACTTCATGGGTGCAAATGGATCATGCTTGCACTGA 513 0.4464 MEDFIFPFKTQEHRAKHNKKRLNEDQVAILENCFASNKRLEPKQKYQLANQLGVPPRQIAIWYQNKRARWKTQTLERDYNALQSNLENVLAEKEKLERDVERLKAELKKAQEMLLLSMKGGGEYNAGSFEEGGSSGLHHDDATGFWQSGEVMQVEELCAYFMGANGSCLH* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01982 170 SUPERFAMILY Homeodomain-like 15 84 IPR009057 -
Rops3g01982 170 ProSitePatterns 'Homeobox' domain signature. 48 71 IPR017970 GO:0000981|GO:0006355
Rops3g01982 170 CDD homeodomain 16 73 IPR001356 GO:0003677
Rops3g01982 170 Pfam Homeodomain 18 71 IPR001356 GO:0003677
Rops3g01982 170 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 128 IPR045224 GO:0003700
Rops3g01982 170 SMART HOX_1 15 77 IPR001356 GO:0003677
Rops3g01982 170 Gene3D - 12 79 - -
Rops3g01982 170 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Rops3g01982 170 Coils Coil 72 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01982 Rops-Chr3 35637513 35638025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01982 12 166 Homeobox Transcription Factor Family AT5G53980 44.516 1.96e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops3g01982 Homeodomain 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01982 - - gmx:100781030 224.942