Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01974 ATGGATAACTATTACCACCACCATCACCACAACAACAACAACAACCACAACCAATTTGATAACAATGATGCAAATTTACCTCCTGGCTTTCGTTTCCACCCCACAGATGAAGAACTCATTACATACTACCTCCTCAAGAAGGTTCTAGACAACACCTTCACAGGTAGAGCCATAGTTGAAGTGGACCTTAACAAGTGTGAGCCATGGGAACTACCTGAGAAAGCGAAGTTGGGTGAGAAAGAATGGTACTTCTTTAGCCTACGTGATAGAAAGTACCCAACTGGGTTACGTACCAATAGGGCCACTGAAGCTGGTTATTGGAAAGCCACAGGGAAAGATAGAGAGATTTATAGCTCAAAAACTTGCTCCCTTGTGGGAATGAAGAAAACCTTGGTTTTCTATAGAGGTAGAGCTCCAAAGGGTGAGAAGAGCAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTTGCTTACCATTACCTCACTAGAAGCTCCAAGGATGAATGGGTCATATCACGTGTGTTTCAAAAGAGCACCACGACAAACGGTGGCACAACCATGTCAGCCACCACTAGTGGTGGTTCCAAAAAGGCAATAAGAACAAGCACCACCACCACCACTTCCTCTACTAGCATGAGCTTCTGCCCTGAACCCGGTTCACCCTCTTCCATTTACCTTCCACCGCTTCTAGAATCTTCTTCTCCTTACACCACAACATCATTCAACGAAACCTGCTCCTCCTTCGACAGCTCCAACGTTAAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGACGCAACCGCCGCCGCCTTTGCCGGCAACAACTTCGACCTTGTGCCCCCGCCACTGCCGCGGCAACCACCTATCGCCGTTGACCCTTTCTCTCAGTTCCAGAGGAACGTTGTTGGTGTCTCTGCCTTCCCCAGTTTGAGATCATTGCAAGAGAATCTTCAGCTGCCGTTCTTTTTCTCCTCGCCGGCCGGTGACATTTCAGGTTGGCCGGTGACGGAGGAGCAGAGGGTGGTTGACGGTGGTTCCGCCATGCCATTGGGTGGAGCATCAGAGCTTGATTGCATGTGGGGCTTTTGA 1095 0.4868 MDNYYHHHHHNNNNNHNQFDNNDANLPPGFRFHPTDEELITYYLLKKVLDNTFTGRAIVEVDLNKCEPWELPEKAKLGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLTRSSKDEWVISRVFQKSTTTNGGTTMSATTSGGSKKAIRTSTTTTTSSTSMSFCPEPGSPSSIYLPPLLESSSPYTTTSFNETCSSFDSSNVKREHVSCFSTISDATAAAFAGNNFDLVPPPLPRQPPIAVDPFSQFQRNVVGVSAFPSLRSLQENLQLPFFFSSPAGDISGWPVTEEQRVVDGGSAMPLGGASELDCMWGF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01974 364 Gene3D NAC domain 35 183 IPR036093 GO:0003677|GO:0006355
Rops3g01974 364 SUPERFAMILY NAC domain 22 178 IPR036093 GO:0003677|GO:0006355
Rops3g01974 364 ProSiteProfiles NAC domain profile. 26 178 IPR003441 GO:0003677|GO:0006355
Rops3g01974 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 236 - -
Rops3g01974 364 FunFam NAC domain-containing protein 100-like 35 182 - -
Rops3g01974 364 MobiDBLite consensus disorder prediction 183 219 - -
Rops3g01974 364 MobiDBLite consensus disorder prediction 1 23 - -
Rops3g01974 364 Pfam No apical meristem (NAM) protein 27 153 IPR003441 GO:0003677|GO:0006355
Rops3g01974 364 MobiDBLite consensus disorder prediction 183 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01974 Rops-Chr3 35465075 35467069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01974 1 364 NAC Transcription Factor Family AT5G53950 51.880 7.98e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g01974 NAM 6.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01974 - - vun:114185732 488.034