Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01971 ATGGCTCCGATAGATAGATCCACCGTTCTCACCGGATCCAACCCGACCCATTTGGCCAAAGAGATCCGATATAGAGGAGTTAGGAAGAGACCGTGGGGCCGTTACGCCGCCGAGATCCGCGACCCGGGGAAGAAAACCCGAGTCTGGTTAGGGACATTTGACACGGCGGAAGAAGCGGCGCGTGCTTACGACGCGGCGGCTCGTGAGTTTCGTGGTTCTAAGGCGAAAACCAATTTCCCTACCTCGTTGGAGCTAACCAACAACTCAATACGCAGTTCGAGTCAGAGCAGCACCGTCGAGACCTCTTCTCAGCCGCCGCCGGCGTTGGACCTCACTCTCACCCCACTTTCTGCCACCGGCGCGTTGGTTTTCCCGGTGGCTCGCCCGGTTATGTTCTTCGATGCCTTCGCTCAGGTTAAGCATCGCGGTGGTGGGTTTGACCGTCCGGTGGCTGATTTCCGCCGTGCCGCCGGAACACAAAGCGACTCCGATTCGTCCTCCGTCGTGGACTACGAGCGGGTCCCACATCCTAAGCTCTTGGATCTTGACCTTAATGTCCCTCCTCCGCCGGAAGTTGCATGA 582 0.5842 MAPIDRSTVLTGSNPTHLAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGSKAKTNFPTSLELTNNSIRSSSQSSTVETSSQPPPALDLTLTPLSATGALVFPVARPVMFFDAFAQVKHRGGGFDRPVADFRRAAGTQSDSDSSSVVDYERVPHPKLLDLDLNVPPPPEVA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01971 193 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Rops3g01971 193 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Rops3g01971 193 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Rops3g01971 193 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Rops3g01971 193 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Rops3g01971 193 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Rops3g01971 193 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Rops3g01971 193 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Rops3g01971 193 MobiDBLite consensus disorder prediction 82 108 - -
Rops3g01971 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 170 - -
Rops3g01971 193 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01971 Rops-Chr3 35404915 35405827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01971 13 134 AP2-EREBP Transcription Factor Family AT3G15210 61.429 6.89e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g01971 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01971 K09286 - gmx:100785455 223.016