Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01954 ATGTTCTGTAGATATGCATTAGTTCCATCTTTCCTGAGTATTTCCCATGCGGCTGATTCTAGTGGTTTGAAGGAGATAACAAGATATGAAGTTAAAATTAATGAGGAGGAGGACTGGATGGAGAAAGCTCAGGCCTTTGGTGTTTCTAGGGGTTTTGGGCTAAAGGGTAAAGAGTCTTGGTGGTGGGATGATAGTGTGCAACAAAAGATAAAGGTTAAAAGGGAATGCTATAAAACTTGGTCTTTGTGCAAAAATGAGGAAAATTGGAATAATTACAAGGTAGCAAAGCGTGACTCAAAGAAAACAGTAAGTGAAGCTAAAACCAATACTTATAATGGTCTGTATCAGTCCCTAGATATTAAAGCAGGTGAAAGGAATAACTATAGACTTGCCAAGAGTAGGGAAAGAAAAAGAAGAGACTTGGACCAGATAAGATGTATCAAGGGAAATGAGTATTCTTTAGACCCTGCCAGAATTAACACTAGGGGAGATGACCTAAATTACTCCTATTACAGAAGAATTCAGGAGTTTGAGGAGAAAGAAGCATTGAAGAGGATGGCAAATGGTAAGGCAGTTAGACCAGATAATATACCAATTGAGGTTTTGAAGGGATTAGGAGAGAAAGTGGAAGCTATTCTTCGAAGGACATTTCCACCTGAGTCCACGAGAGAACAAAACAGGAAAACAAAATACCTCTTTGGCATTGGTTTGGCCTCTAAAACTTGCTGGGGCAAAATTCGTACTATGCTGCAGCACAGTCTGTGCTTTCACAAGCAAAGGGACACGCTTCCATGCCACGAAGCCCGTGGAGTTGCTTCTCGGAGTCTAGTTCAAGAGAAAGAATGTCAAGTGGAGCAACGCACAGGTGTCATGCTTGCAATCAACCAATGGTGCTTGAAGGGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCCCAAGGACATGTTAGTTCTCGTGCTAGTCTCTTGGGTCTCCAAGCTCACATGCATGAAACCATTTCGTCGCCATGCAACTCACATAACTCACCCTCATTTTCTGGTTATGGGCCCCCGTTTTGCATGAAGACTGCTAATGTTACTGGCAAAGTGACCAGTCTTATAAATGGCCAAGATAAGGAGTTGACTCACCCACCAATTCTGACCTCACAAACCAACACACGTTCGTGCCCTGGAGCTTCACTGTTCACGTAG 1254 0.429 MFCRYALVPSFLSISHAADSSGLKEITRYEVKINEEEDWMEKAQAFGVSRGFGLKGKESWWWDDSVQQKIKVKRECYKTWSLCKNEENWNNYKVAKRDSKKTVSEAKTNTYNGLYQSLDIKAGERNNYRLAKSRERKRRDLDQIRCIKGNEYSLDPARINTRGDDLNYSYYRRIQEFEEKEALKRMANGKAVRPDNIPIEVLKGLGEKVEAILRRTFPPESTREQNRKTKYLFGIGLASKTCWGKIRTMLQHSLCFHKQRDTLPCHEARGVASRSLVQEKECQVEQRTGVMLAINQWCLKGEMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHVSSRASLLGLQAHMHETISSPCNSHNSPSFSGYGPPFCMKTANVTGKVTSLINGQDKELTHPPILTSQTNTRSCPGASLFT* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01954 417 SUPERFAMILY RING/U-box 300 334 - -
Rops3g01954 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 344 IPR013083 -
Rops3g01954 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 282 332 - -
Rops3g01954 417 Pfam RING-H2 zinc finger domain 281 328 IPR024766 GO:0008270
Rops3g01954 417 MobiDBLite consensus disorder prediction 395 417 - -
Rops3g01954 417 ProSiteProfiles Zinc finger RING-type profile. 303 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01954 Rops-Chr3 34867285 34876697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01954 303 332 C3H Transcription Factor Family AT2G44330 76.667 4.17e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01954 - - bdi:112270755 150.984