Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01945 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCCGCAAATTCTTTAAAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAAGGTGCTACCTATTTTCCAGCCGTTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCATGTTAGTGGTCGTTGTGAAGCTGCAATAACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTATGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAACTAGCTTATCTCAGGGAACAAGCAGCTCAAGGATGTCTTAATGCCTCAACTGCTGAAAACCCTGATGAGAAATACTTTGAAAAACCTAATACTTTCCCCCAAGATCTTCAAATCGCTTAG 420 0.4214 MTGSGSPCGARKFFKRKCVRGCVFAPYFCHEQGATYFPAVHKVFGASNVSKLLAHLHVSGRCEAAITISYEAQARLQDPIYGYVAHIFALQQQVVNLQAQLAYLREQAAQGCLNASTAENPDEKYFEKPNTFPQDLQIA* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01945 139 Coils Coil 87 107 - -
Rops3g01945 139 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops3g01945 139 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops3g01945 139 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01945 Rops-Chr3 34724933 34728476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01945 7 125 AS2 family AT3G58190 72.727 3.72e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g01945 LOB 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01945 K13945 K13944 gmx:100816960 228.024