Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01939 ATGGCAGCAATTCCATTAGGGTTGCAGCAACTTGATGTTATTGGAGTTGCCGAAACCGGTTCTGGAAAAACCGCTGCATTTGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCTCGCATAAGTGAGGAGAATGAAGCTGAAGGTCCTTATGCTGTTGTCATGGCACCAACTCGTGAACTTGCTCAACAAATTGAAGATGAGACTGTCAAGTTTGCATCTCGGCATCAAGCAATGCTTTCCAGCAATTTGAAACCTGAGAATGAAGAGGAGGAGCTTGATGAAAAGAATATTTATAAGACCACTTATATGTTTAGTGCCACTATGCCTCCTGCTGTCGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTTACCATAGGTACTGTTGGAAAAACAACCGACTTGATTAGCCAGCACGTGAACATGATCTGGGAAATTTTATAG 453 0.4305 MAAIPLGLQQLDVIGVAETGSGKTAAFVLPMLSYITRLPRISEENEAEGPYAVVMAPTRELAQQIEDETVKFASRHQAMLSSNLKPENEEEELDEKNIYKTTYMFSATMPPAVERLARKYLRNPVVVTIGTVGKTTDLISQHVNMIWEIL* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01939 150 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 4 150 IPR014001 -
Rops3g01939 150 Pfam DEAD/DEAH box helicase 2 93 IPR011545 GO:0003676|GO:0005524
Rops3g01939 150 SMART ultradead3 1 142 IPR014001 -
Rops3g01939 150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 129 IPR027417 -
Rops3g01939 150 Gene3D - 1 91 IPR027417 -
Rops3g01939 150 PANTHER RNA HELICASE 2 93 - -
Rops3g01939 150 Gene3D - 92 133 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01939 Rops-Chr3 34606323 34606847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01939 4 74 Eukaryotic Initiation Factors Gene Family AT5G11200 41.667 1.02e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01939 K12858 - gmx:100792810 135.961