Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01931 ATGAGTGGTGGTGTGGGTTGCATGGAGGTGGTGGGTTGCATGGATGTGGAGTTGAGTGTGGAAGAGAGAAACTTGTTCTCTGTTGGGTACAAGAATATGGTGGGGTTGATGCAATATGAGGAGTTTGTGGAGGTTGTTGATAACTACTGTGTGTATAGGAATGAGATCCATCACTCAGTTGGAGAGCGTACTCAAGTGTTGCAGGATGTTGTTGCTGATCCAACTCTTCCTCGCACCAAGGCTGTTCGCTGCACTCAATGCAATCATGGTGAAGTTGTCTTTTTCCAGGCTACCGCCAGAGGGGAAGAAGGAATGACACTTTTTTTCGTTTGCTGCAACCCAAACTGTGGACACCGTTGGAGAGACTGA 369 0.477 MSGGVGCMEVVGCMDVELSVEERNLFSVGYKNMVGLMQYEEFVEVVDNYCVYRNEIHHSVGERTQVLQDVVADPTLPRTKAVRCTQCNHGEVVFFQATARGEEGMTLFFVCCNPNCGHRWRD* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01931 122 CDD Zn-ribbon_RPB9 72 121 IPR034012 GO:0006379
Rops3g01931 122 FunFam DNA-directed RNA polymerase subunit 55 122 - -
Rops3g01931 122 SUPERFAMILY 14-3-3 protein 6 68 IPR036815 -
Rops3g01931 122 Pfam Transcription factor S-II (TFIIS) 83 121 IPR001222 GO:0003676|GO:0006351|GO:0008270
Rops3g01931 122 SMART Cys4_2 82 122 IPR001222 GO:0003676|GO:0006351|GO:0008270
Rops3g01931 122 Gene3D - 55 122 - -
Rops3g01931 122 Gene3D - 3 40 IPR036815 -
Rops3g01931 122 ProSiteProfiles Zinc finger TFIIS-type profile. 80 121 IPR001222 GO:0003676|GO:0006351|GO:0008270
Rops3g01931 122 PANTHER DNA-DIRECTED RNA POLYMERASE 41 121 IPR012164 GO:0003899|GO:0006351
Rops3g01931 122 SUPERFAMILY Zinc beta-ribbon 59 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01931 Rops-Chr3 34469110 34469478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01931 5 35 14-3-3 family AT1G34760 61.290 9.48e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01931 K03017 - gmx:100305979 167.162