Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01926 ATGATGGAGAAAGTGAGAAAGAATAGCACAGTTGAAGAAGAAGTGGAAAATGAAGTAGAAGAGGAGGATGAAAATGGTGGTGGTGATGTTAGTCTCACAGAAGAAGAAAAGAAGAAAGGGGTTGGTGGTGGTGGGAGAAGAGGATCAAGTGGTGTGGGAGGGATTTCTTCACCTTCCTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACTGATGCAAAGAGATACCATCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTATTGTGGTGGTTGCAGGGCTCAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTTGTGGAATTTGATGAAGCTAAAAGAAGTTGCCGCAGGCGCTTGGCCGGACACAATGAACGTCGCCGGAAAAGCAACCCAGAAGCTGCCAGTGAGGGCAGCAGCCAAAGCAAAGGGCACCATCACCCTAAGGAAACACAGTGCAGGATTGCTGATGAGAGGGGAAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAATATCAGATGA 549 0.4863 MMEKVRKNSTVEEEVENEVEEEDENGGGDVSLTEEEKKKGVGGGGRRGSSGVGGISSPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPIVVVAGLRQRFCQQCSRFHDLVEFDEAKRSCRRRLAGHNERRRKSNPEAASEGSSQSKGHHHPKETQCRIADERGRIQMNLPGSSGYKSFNIR* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01926 182 MobiDBLite consensus disorder prediction 1 63 - -
Rops3g01926 182 Pfam SBP domain 60 133 IPR004333 GO:0003677
Rops3g01926 182 MobiDBLite consensus disorder prediction 124 182 - -
Rops3g01926 182 Gene3D - 51 121 IPR036893 GO:0003677|GO:0005634
Rops3g01926 182 ProSiteProfiles Zinc finger SBP-type profile. 57 134 IPR004333 GO:0003677
Rops3g01926 182 MobiDBLite consensus disorder prediction 144 161 - -
Rops3g01926 182 FunFam Squamosa promoter-binding-like protein 14 52 121 - -
Rops3g01926 182 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 147 IPR044817 GO:0003677
Rops3g01926 182 MobiDBLite consensus disorder prediction 14 29 - -
Rops3g01926 182 SUPERFAMILY SBT domain 58 138 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01926 Rops-Chr3 34267803 34269374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01926 15 182 SBP-box Gene Family AT3G15270 48.521 4.85e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops3g01926 SBP 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01926 - - aprc:113864686 260.766