Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01910 ATGGTGATAGGCGCAGAAGCTCCATCAGCTTATCATGTTGCACCTAGGAGTGAAGCTCCAAACCAGATTCATGTCCCAGAAGCACCAACTACTGCAGCAACTGCTGTTGTTAGTGCTTCCTCAGTGAGTGGGGGGTTGGATGGAACATCAGTTAAGAAGAAAAGAGGAAACGGGGGAAACCACGTGGAATGGAATACAAGCAGGAAAAAACTTGGCTTGGATCATCATTTAGGTGACTTGAATGCATGCTCTGATGGTACAAACTTTATGCCACATATCATCACTGTCGATACTGGAGGGGACGTTACAATGAAGCCAGATTCTTCTTGGGGTACTTTGACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTACGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCGAGTGGGTTGAGCGTCTCGCTGGCGAGCCCCGATGGTCGTGTTGTAGGTGGTGGAGTTGCTGGCCTCCTGGTAGTTGTCAGTCCTGTCCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAGCCAGCAAGATCAGAAACCAAAGAATCCTAAGTCTGATCATGCACCATTAGCCACTGTTACTCCAGCCATTGCAATATCTTCTGTATCACCATCACGGCCGTGA 642 0.4829 MVIGAEAPSAYHVAPRSEAPNQIHVPEAPTTAATAVVSASSVSGGLDGTSVKKKRGNGGNHVEWNTSRKKLGLDHHLGDLNACSDGTNFMPHIITVDTGGDVTMKPDSSWGTLTYEGRFEILSLYGSFMPTDNQGTRSRSSGLSVSLASPDGRVVGGGVAGLLVVVSPVQVVVGSFLPSSQQDQKPKNPKSDHAPLATVTPAIAISSVSPSRP* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01910 213 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 181 - -
Rops3g01910 213 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 176 IPR005175 -
Rops3g01910 213 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 105 IPR039605 GO:0003680
Rops3g01910 213 MobiDBLite consensus disorder prediction 179 213 - -
Rops3g01910 213 ProSiteProfiles PPC domain profile profile. 56 199 IPR005175 -
Rops3g01910 213 Gene3D - 91 192 - -
Rops3g01910 213 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01910 Rops-Chr3 33672483 33673307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01910 2 212 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 41.137 7.38e-51 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01910 - - gmx:100796830 216.853