Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01902 ATGATTGAGAAGGAGATAGAAGCTAAGAGGCAAGGGCTCTCACTCTCAGAGCTAAAAGTAGAAGAGGCAGGTTACTCTCAGGATGAGCATGTGTACTGTGGCAACTGCAAAACCTCAATATTTGATTACCACAGAAGATGCACAAAATGCTCTTTTTGCCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTCTAGGTGGTGCAGATCCAATTGAGTTGGAGATTGTCTTCCAAGGTCGTGGTTATCTGCATGATAGTGATGGTAGCATTCCTTGTCCTAAAGTCCATCATGAATGTGACCATGGTCTCCTTGAACTGAGAAGCATACTTTCTCCAAATTTCATCTCTGAGTTAGTATGTAAAGCAGAAGAACTAGCAGAAGCATATAAGCTTCAAGATGCAGTTGAGACTCTTGATAATATGTGTTCTTGTTTAAAGCTTGCTAGACAAACAGATGATGGATGTAACAATATGAGGAAGGCAGCTTTTCGTGAAGATTCCGGTGACAACTGTTTATACTGTCCTAGGGCTGTAGATCTACAGCATGAGGATTTAAGACATTTTCAATGGCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTGCTTGAATGTACATTTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAACTAAAACCAAGCATGATCAACATTTGGATATAAAGGCAATGGATTGCTTAGATTGGTGTGAGAGAGAGATTAATATCCACCAATTCTTTACTGGGTATACAAATGGTCGTGAGGATTGGCTTAATTGGCCTCAGATATTGAAACTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGTTTACCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCATATAAAGAATATACAGATCCTTACAGAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTATGGGTTGTCTAAAGCCAGACATGGGGCCAAAAACATATGTTGCTTATGGATTTGCTCAGGAGCTTGGGCGTGGTGATTCTGTGACCAAGCTCCATTGTAATATGTCTGATGCAATCAATGTGTTGACTCATATTGCCGAAGTGAAATTGTATTCGAGGCGCCTTACTGCCATTGAGAATTTGACTCAAAAACACCTTGAGCAAGACAAAAGGGAGCTACTAGGAGATAATCAGGATGGGGAAACTAATGGTGACAGGCTTGATATTTCATCTTCTACCATAAATGCTTTGGACAATCAAAATAGTGTTCGACTGATGGAAAATGAAAGTGGACTATGTGATGGGAAAGTGGTTGATCAGTTTCATCAACACTCTATTACAAATAATGATGGTCTTTCACATCTGTCAAAGCTCAAAGTGGTCAAGGAAAAAACAATTAAACAGGAAAATGGTATGTTGGTTGGGGGCGATGCTTCAGAAGGTGCTCTTTGGGATATTTTTCGGAGACAGGATGTACTTAAATTGGAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGTTGTCCTTTAAAACAGGTTATTCACCCCATTCATGATCAGACCTTTTATCTGACTATGGAGCATAAGAAGAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTATTCAAAAGCTAGGAGATGCTGTTTTGATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAATGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTTCGCATGCTTCCGATAAATCACAGTTCCACTAAGGACAAATTGGAGGTGAAGAAAATGACTATATATGCCATGCTTGATGTGGTCAAAAATTTGGAGAAAGCAAGGATCAATATTACTCTTGACCAGTGCAATGAGAGAATGACTGATTCTGAAGTTGTAGAGACTGGAGGCTCGAAAAGAAAAACAGAAGCTTTAAAGACTAAACTTCCCTCTCATGGCCCTGTTGAGGTCAAAGATGATGGTGCTCAGTCACTTCATTCTAAAAAGGCCAAAACTATTGATACTCCAGAGAAGAGACCTGCCAATCAACCAAAAGGGGTATCGATTCAAGAGAATCCTTCTGTTGCCTCGACTACTTGTGCGACTTCAAAGGATGCAAATCCCCAAATTAAAACTCAAACTTCCCATTATGAACCAGATCCTTTGACTCAATCGAGAGTCAATCCATCTGAGGATCCTGCTCCTCAAAATGAAGTTCAAACTTCTAATCTTGTCGTTGACCCTTCTACCCAAACAAGGGCTGAACCACTTGAGGACTTGAATCCTCAAGTTGAGGTTGAAACGTCTAACCCTGCTACTGAAGCTGTACGACCCAAGTCCTGTGGATTAGAAGGTCTGCCTAGCTTAAGTGATATTTCTACTGAGTCCAATTCGAGTGATTCTTTAATTCAAGTCATTTTGAATGACTCTACTTCTGGTCCTACCATTGACCAAGTACAAGAAGATGCTCGAGAACACATGCCATTGGCTATAATCCTTCCATATCAAAATCAACAAGAAATTCCTCACAGTTCGGTTCGATTAGATCCAATCCAACAAGAAGCTCCACCAAGTCCAAAAACTGGCCATAGTGCTTCTTCTCCACCCAAGCAATATGAGAATGTTGATCCTCCCACTCGAAACGATGACATGGACTTAGACTTGGATTATCTGAACCAACTATTGAGTGAGGATCCTCTTTCTGCATTGGAAGCTGCTCTTTCAGGAAAAGGCTCAACTCCTTCGAGCTCTTCATGGAAAAGCTTGTTTGTTGATCTCAAAAAGATAATCAATGACAAACAGTTTTTTCGAAGCCTCATTGATGACGAAAAATGTGATGAGGTTGAAACTATCATTAAACAAATCAATGCTCGAAAGGAAGAGATACCAACTGACACTTTGAAATGGGTAACAGGTTTCTCCAACTCTTACTATGACATGGTTGAAGCAGTAAGGGATATTGAGCAAAATAAATTGAAATATAATGAACTCAGCACTTCCCAACAAAAAACTTTAGAAGAATCCACTCATTCGAAAATGGAGCTCGAAAGGACAATGGGATTGGTTGCTGCTGGTCGAAATAAGCTTTTAAAAGTCGAAGAAGAGATTTCTTTGCTAGAGGCCCAATTGGCAAAGAAAAAGGGTTTTGGCCAATTTCTTTGCTCGAGCTTGAAGATTGGTGAAGAAAAGGAAATTGAGCTTTCATCAAGAGGCCAGGAGTTGGACCAGATTGCAGCTGCTAATGCCACATCTCTTCAGGAGCTCAAAATAGCTGAACAATCTTATGATGAGGCCTTTGCTGTAGCAAAAACTGAGTTTAAAAATTTTATGAACAATTTCCCATGTTAA 3390 0.4059 MIEKEIEAKRQGLSLSELKVEEAGYSQDEHVYCGNCKTSIFDYHRRCTKCSFCLCLICCRELRSGQLLGGADPIELEIVFQGRGYLHDSDGSIPCPKVHHECDHGLLELRSILSPNFISELVCKAEELAEAYKLQDAVETLDNMCSCLKLARQTDDGCNNMRKAAFREDSGDNCLYCPRAVDLQHEDLRHFQWHWSKGEPVIVSNVLECTFGLSWEPLVMWRAFRQITKTKHDQHLDIKAMDCLDWCEREINIHQFFTGYTNGREDWLNWPQILKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPYRGALNLAVKLPMGCLKPDMGPKTYVAYGFAQELGRGDSVTKLHCNMSDAINVLTHIAEVKLYSRRLTAIENLTQKHLEQDKRELLGDNQDGETNGDRLDISSSTINALDNQNSVRLMENESGLCDGKVVDQFHQHSITNNDGLSHLSKLKVVKEKTIKQENGMLVGGDASEGALWDIFRRQDVLKLEEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKKKLKEEYGIEPWTFIQKLGDAVLIPAGCPHQVRNLKSCINVALDFVSPENVGECFRLTEEFRMLPINHSSTKDKLEVKKMTIYAMLDVVKNLEKARINITLDQCNERMTDSEVVETGGSKRKTEALKTKLPSHGPVEVKDDGAQSLHSKKAKTIDTPEKRPANQPKGVSIQENPSVASTTCATSKDANPQIKTQTSHYEPDPLTQSRVNPSEDPAPQNEVQTSNLVVDPSTQTRAEPLEDLNPQVEVETSNPATEAVRPKSCGLEGLPSLSDISTESNSSDSLIQVILNDSTSGPTIDQVQEDAREHMPLAIILPYQNQQEIPHSSVRLDPIQQEAPPSPKTGHSASSPPKQYENVDPPTRNDDMDLDLDYLNQLLSEDPLSALEAALSGKGSTPSSSSWKSLFVDLKKIINDKQFFRSLIDDEKCDEVETIIKQINARKEEIPTDTLKWVTGFSNSYYDMVEAVRDIEQNKLKYNELSTSQQKTLEESTHSKMELERTMGLVAAGRNKLLKVEEEISLLEAQLAKKKGFGQFLCSSLKIGEEKEIELSSRGQELDQIAAANATSLQELKIAEQSYDEAFAVAKTEFKNFMNNFPC* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01902 1129 MobiDBLite consensus disorder prediction 864 899 - -
Rops3g01902 1129 Pfam JmjC domain, hydroxylase 484 578 IPR003347 -
Rops3g01902 1129 Coils Coil 1036 1056 - -
Rops3g01902 1129 MobiDBLite consensus disorder prediction 642 796 - -
Rops3g01902 1129 SMART cupin_9 289 595 IPR003347 -
Rops3g01902 1129 MobiDBLite consensus disorder prediction 871 888 - -
Rops3g01902 1129 MobiDBLite consensus disorder prediction 699 789 - -
Rops3g01902 1129 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 629 IPR045109 GO:0032454|GO:0033169
Rops3g01902 1129 MobiDBLite consensus disorder prediction 646 692 - -
Rops3g01902 1129 SUPERFAMILY Clavaminate synthase-like 181 613 - -
Rops3g01902 1129 Gene3D Cupin 176 604 - -
Rops3g01902 1129 ProSiteProfiles JmjC domain profile. 308 595 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01902 Rops-Chr3 33311198 33328281 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops3g01902 JmjC 1.6e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01902 K15601 - gmx:100805723 1006.13