Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01897 ATGGGTTGCATTTATTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGCCCAAGGGAGTGTTTGTCAAACAAGGCTTCATTCGACTCTCGTGTGTCTAGGGGTTTTTCATCAAGGAGGGAGGAAGCATATAGAGTGAAGGATAGATATGATGCAAATAATGATGATGGCAGAATTGCCTTGATTGATAAGCAAGGGAATGGTTCCGCCCGGTTGCAAGTTGATAATGATGAAAGGAAGAAGGAGAAAATGGAGTATGTTGTTGTTCAACGACATCCAAGGGTTGGTAGTGTTCCCAAGGCTATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCACCTTGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCACGCTGTGCGGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTTGTGATCTTGAACAGAAGAAAATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATCCTACGTAGGCTTGATCATCCGAATGTCATAAAACTGGAAGGCCTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTCGAGTACATGGAGCATGACTTGGCTGGGCTTGCTTCACATCCAGGACTGAAGTTTACTGAAGCACAGGTTAAATGTTACATGAAACAACTTTTATCTGGACTTGATCACTGCCACAGCTGTGGTGTGCTACACCGCGACATTAAGGGTTCTAACCTTTTGATTGACAACAATGGAATCTTGAAGATTGCTGACTTTGGTTTGGCAAGTGTTTTTGATCCCAATCAAATTCAGCCTCTAACAAGCCGAGTTGTCACTCTTTGGTACCGACCACCAGAGCTGTTACTTGGAGCCACATACTATGGCACTGCTGTAGATTTATGGAGTACGGGTTGCATACTTGCTGAGCTGTATTCTAGCAAGCCTATAATGCCTGGAAGAACCGAGGTGGAGCAGTTACATAAAATTTTCAAACTATGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCCCATGCAACAATATTTAAGCCCCAACAACCCTATAGGCGCTGTGTCACCGACACATTCAAGGACTTTCCTGCACCTGCTTTAGCACTTATGGAAACCCTGTTGTCCATAGATCCTGCTGATCGTGGAACTGCAGCATCGGCTTTGAAGAGTGAGTTCTTCACTACAAAGCCTCTACCTTGTGATCCTTTGAGTTTGCCAAAGTATCCTCCCAGCAAAGAATTTGATGCCAAATTACGGGATGAAGAAGCAAGGAGACAAAGGGTAGTAGGAAGCAAGGGCCAGAGACATGACCTTGAAAGAAGAGGGACAAGAGAATCTCGAGCCGTTCCTGCACCTGATGGCAATGCTGAACTGGCCGTGTCAATGCAGAAGAGACAAGGTCAGGTTCATTCTAAAAGCAGAAGTGAGAAGTTTAATCCTCATCCTGAAGAAGCTTCTGGATTTCCCATTGATCCCCCTAGACCATCACAAGCTGTAGAAGTAGGTGTAGATCCTCAGGTATCACAACATAAAAGAGCCTCCCACTCTGGTCCACTGGCTCACCGCACTGCATGGGCTAAAGCTGGTAAGAACCAGGATGACGCCCCAAAGGTTTCAGTTGGAGGTGACCCATCAACAATCTCGGGCTTAGTTTCAGCTAGGAGCCTAGTAGGTGCTTCTCAAAAGGACGAAGGAAGAGGCAGCAACAAAGACCCTGTTCTTGTTGGTTATGGGTCAAAGGGTCACAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCATGAGCACCAAATTCAAGAGGCTATTCGACGAGCACGTTTGGACAAAGCAAAAGTGAAAAGACTTCAAGCTGAAGGGAACCAGATGACCAGTTCATTAATCATCTCTGGTCGATAA 2001 0.4533 MGCIYCKPSAIEDSKESPRECLSNKASFDSRVSRGFSSRREEAYRVKDRYDANNDDGRIALIDKQGNGSARLQVDNDERKKEKMEYVVVQRHPRVGSVPKAMEGEQVAAGWPPWLAAVAGEAIKGWLPRCADSFEKLDKIGQGTYSNVYRACDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMKQLLSGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYSSKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVTDTFKDFPAPALALMETLLSIDPADRGTAASALKSEFFTTKPLPCDPLSLPKYPPSKEFDAKLRDEEARRQRVVGSKGQRHDLERRGTRESRAVPAPDGNAELAVSMQKRQGQVHSKSRSEKFNPHPEEASGFPIDPPRPSQAVEVGVDPQVSQHKRASHSGPLAHRTAWAKAGKNQDDAPKVSVGGDPSTISGLVSARSLVGASQKDEGRGSNKDPVLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHEHQIQEAIRRARLDKAKVKRLQAEGNQMTSSLIISGR* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01897 666 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Rops3g01897 666 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Rops3g01897 666 SUPERFAMILY Protein kinase-like (PK-like) 128 425 IPR011009 -
Rops3g01897 666 CDD STKc_CDK9_like 134 418 - -
Rops3g01897 666 MobiDBLite consensus disorder prediction 443 472 - -
Rops3g01897 666 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01897 666 PANTHER CELL DIVISION PROTEIN KINASE 132 424 - -
Rops3g01897 666 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Rops3g01897 666 Coils Coil 633 653 - -
Rops3g01897 666 MobiDBLite consensus disorder prediction 443 571 - -
Rops3g01897 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Rops3g01897 666 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Rops3g01897 666 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01897 666 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01897 666 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01897 Rops-Chr3 33141319 33148668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01897 126 485 Core Cell Cycle Gene Families AT5G10270 51.064 8.11e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops3g01897 Pkinase 6.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01897 - - gmx:100798022 1137.09