Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01882 ATGACACTTTTGAAATCTGTAACAGGGTATATTGCTGTTGGAGAAAATTCCATGGAATCTGCATACTTCAATTCTATTGAGGAAGTCTCACCAAAGCAAAAATTGAAATCCACTTCAGCAGAGACTACAATCTCTAAAAGTGAAAATGGTTGCTTTGATTGCAATATTTGCTTGGAATCAGCACATGACCCTGTGGTCACTCTTTGTGGTCACTTGTACTGTTGGCCATGTATATACAAATGGCTTAATGTTCAAAACTCCTCGGTTGAACCAGAGCAAGATCAAACATGCCCAGTTTGTAAAGCTGAGATCTCTCACACTTCATTAGTTCCCCTTTATGGCCGAGGAACATCTAACTCAGAATCTGAAGCCAAGAATTTTCAATTGGGTCTTGGAATACCTCACAGGCCACCACCTTACAACTTGAATTCTATGTCAACTTCTTCTAATCATGCATCAAATTCATCACATCATGGTGAGCAACTCCATCCAAGTTATTTCAGGCCACAATCTAGGCCATTTCATTATCAGCATTACTTCCCTCACCTTCATGGAAGTCATGGTGCTAATGGATTACCTTATCTTGGGGTTGCTGCTATGACTAGTTTCTTTAATCCTATGATTGGTATGTTCGGGGAGATGTTCTTGACAAGGATTTTTGGAATCTCAGATGCAAATTTGATTTCTTATCCTCATAATGGAAGTGGCAGTCCTAGAATGAGGAGACAGGAGATGCAGATTGACAAGTCCCTAAACAGGGCACTTATCATGTGCAGTCCTGGATAA 786 0.402 MTLLKSVTGYIAVGENSMESAYFNSIEEVSPKQKLKSTSAETTISKSENGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLNVQNSSVEPEQDQTCPVCKAEISHTSLVPLYGRGTSNSESEAKNFQLGLGIPHRPPPYNLNSMSTSSNHASNSSHHGEQLHPSYFRPQSRPFHYQHYFPHLHGSHGANGLPYLGVAAMTSFFNPMIGMFGEMFLTRIFGISDANLISYPHNGSGSPRMRRQEMQIDKSLNRALIMCSPG* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01882 261 CDD RING-HC_AtRMA-like 52 102 - -
Rops3g01882 261 SUPERFAMILY RING/U-box 51 113 - -
Rops3g01882 261 MobiDBLite consensus disorder prediction 140 161 - -
Rops3g01882 261 Pfam Zinc finger, C3HC4 type (RING finger) 54 100 IPR018957 GO:0046872
Rops3g01882 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 159 IPR013083 -
Rops3g01882 261 FunFam E3 ubiquitin-protein ligase RMA1H1 27 121 - -
Rops3g01882 261 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
Rops3g01882 261 ProSiteProfiles Zinc finger RING-type profile. 54 101 IPR001841 -
Rops3g01882 261 SMART ring_2 54 100 IPR001841 -
Rops3g01882 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 27 257 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops3g01882 261 MobiDBLite consensus disorder prediction 140 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01882 Rops-Chr3 32870263 32871126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01882 32 254 C3H Transcription Factor Family AT4G27470 48.458 3.37e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01882 K10666 - gmx:100817526 348.591