Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01875 ATGCTCTCCTTCGTGCCCTCACCTATGATGTTGACGAGTTCTATTCCCTTTGTCATCCAGGTTCTTCGAGATGGTAGATGGAGCGAGCAAGATGCTGCGGTCTTGGTTCCTGGTGACATAGTTAGCATCAAACTTGGAGATATCGTACCAGCTGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGATCAGATTATTGTTATGTACCCCATCCAAGATCTAAGTATCGCCACGGAATTGATAACCTTCTTGTACTTCTTATTGGGAATTCCAATTGCCATGCCCACTGTTCTCTCAGTGACCATGGCCATTGGTTCTCATAGGTTATCTCAGCAGGGGGCTATCACAAAGAGGATGACAACTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGAACTTTAA 420 0.4476 MLSFVPSPMMLTSSIPFVIQVLRDGRWSEQDAAVLVPGDIVSIKLGDIVPADARLLEGDPLKIDQIIVMYPIQDLSIATELITFLYFLLGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTTIEEMAGMDVLCSDKTEL* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01875 139 Pfam E1-E2 ATPase 19 65 - -
Rops3g01875 139 Gene3D - 17 65 - -
Rops3g01875 139 PANTHER CALCIUM-TRANSPORTING ATPASE 66 137 - -
Rops3g01875 139 SUPERFAMILY Calcium ATPase, transmembrane domain M 74 128 IPR023298 -
Rops3g01875 139 Gene3D - 67 129 - -
Rops3g01875 139 SUPERFAMILY Calcium ATPase, transduction domain A 16 66 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01875 Rops-Chr3 32673640 32675039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01875 20 65 Primary Pumps ATPases AT1G80660 84.783 6.11e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01875 K01535 - cit:102627775 144.05