Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01868 ATGGTAATGATATCCAACGTTGGTGGCAGTGGGGATGTGAAGGCAGTGTTGATCAGAGGATCCAGAAGTGGGGTTTGGTTGCCAATGCACAGGAATTGGGGAGCCAATTGGCAAAGCAGTGCAGATCTTAGAAACCAGAGACTCTCATTCAAGATGACTCTGGTTGATGGGAAGACATTGGTGTTTCTCAATATGGTGCCTTCAACTTGGAGATTTGGACAGACATTTTCATCCCAGAGTCAGTTCTTTTAG 252 0.4563 MVMISNVGGSGDVKAVLIRGSRSGVWLPMHRNWGANWQSSADLRNQRLSFKMTLVDGKTLVFLNMVPSTWRFGQTFSSQSQFF* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01868 83 Pfam Expansin C-terminal domain 1 67 IPR007117 -
Rops3g01868 83 PRINTS Expansin/Lol pI family signature 26 40 IPR007118 GO:0005576
Rops3g01868 83 PRINTS Expansin/Lol pI family signature 64 78 IPR007118 GO:0005576
Rops3g01868 83 PRINTS Expansin signature 35 56 IPR002963 GO:0009664
Rops3g01868 83 PRINTS Expansin signature 64 80 IPR002963 GO:0009664
Rops3g01868 83 Gene3D - 1 83 IPR036749 -
Rops3g01868 83 SUPERFAMILY PHL pollen allergen 1 78 IPR036749 -
Rops3g01868 83 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1 78 IPR007117 -
Rops3g01868 83 PANTHER EXPANSIN-A15 1 81 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01868 Rops-Chr3 32557920 32558171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01868 1 83 Expansin Gene Family AT3G15370 68.675 1.51e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01868 - - gmx:106795376 146.747