Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01852 ATGACCACCAAACCCGTGGAGAAGAAGGGCCACGAACTAGACGACCAAAACGACCACGAAAACCTCTGTTTCTACGACTCCAACGACCGTTTACTCTCCTCATGTTCCTGTTCCACCTCCACTTCCGACGACGACGACACCACCACCCCCAAAAACGACACCACCAATCTTAAAAACGACACCTCCAATCCCAACTCTCCCACTCATGTTCTCCACAAATTTTCCTTCTCCAACATGTGCCAGTACGATGTATGGATCTCCGAACCCTCCTCCGTTTCCGAACGCCGTTCCCAACTCCTCCGACAATTCGGCCTCGCCGACCGGTCTTCCTCAGCCGCCGTAATTTCCCGATCAATCTCTTCCCATCATCGCCACCACACGATCACCGACAATTCTAATTGCGCCGCCGCCACTTCCGGAATTTTCCGATTGAAATCCGACGGTGGAGCCGATCGCGGTTGTAATAATAAGTATTGTTCATGTAGTAATAATTGTTTTTCTTCTGACCAATGTGAAAGTGAGGCATTGAGTGTAAATAATAGTAATAATGGTGCCAATGGCAATGGTGTAAATTGTAAGCATGTTTTGGGGGAAATTTGCAAAAGGGTGAATGGAGATGAGGGTTTGGAGTGTAATGGGGTGGAGGAACAAGTGTGTAGGATAAGGGATCTGGATAATGGGAAAGAGTTTGTGGTGAAGGAGGTAAGGGAAGATGGGATGTGGAACAAATTGAAGGAAGTTGGGACTGGGAGGCAGTTGACTATGGAGGAATTTGAGATGACTGTTGGGCACTCCCCAATTGTGCAAGAACTAATGAGGAGGCAAAATGTGGAAGAGGGTAATGGGGATTTTGTAGATTTGAATGTGAAGGGTAATGTTGATGTTGCTGTTGGTGGTGGTGGTGGTGGTGATGGATATAAGATGAAGAAGAAAGGGAGTTGGTTAAAGAGTATAAAGAGTGTTGCTAGTGTTGTGAAGGGTCATAAGGAGAAGCGGAGTGGTGATGAGAGGGATACTTCTTCGTCGGAGAAGGGTGGCCGGAGGTCGAGTTCTGCTACTGATGATAGCCAGGATGGTGGTTCATTTCATGGGCCGGAGAGAGTGAGGGTTAGGCAGTATGGTAAGTCATGTAAGGAGCTTACAGGACTTTACAAGAGCCAGGAGATTCAGGCTCATGATGGATCCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATCTTGCTAGTGCAGGTGAAGATTGTGTTATCCATGTTTGGCAGGTTGTGGAGTCAGAGAGGAAGGGTGAGCTTCTGCTGATGGAGAAACCGGAAGATGGGAATGTGAATATGCTGTTGGTTGCGAATGGATCGCCGGAACCAGCTCTGCTGTCCCCTAGCATGGACAATCATCCTGAGAAGAGAAGGGGAAGGTCATCTGTTAGCAGAAAATCATTAAGCTTGGATCAAATATTGGTGCCAGAGACTGTGTTTGCACTCACTGAAAAACCCATTTGCTCCTTTAAAGGTCATCTCCATGATGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCATTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGAATTTGTCTAGCAAGTCTTGTTTGAAAATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTGCACGAGATGGTAACTGCTGCTTGTTATATGCCTGATGGTCAGGCTGCACTAGTTGGTTCGTACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATAAATTTGCAGAACAGGAAAAAGAGATCGAATCACAGGAAAATTACTGGCTTCCAGTTTTCCCCGGGAAGTTCATCAGAAGTACTCATCACATCTACTGATTCACGGATTCGGGTTGTTGATGGTGTTGATTTCGTTCATAAGTTCAAAGGGTTTCGGAATGCAAATAGCCAAATTTCAGCCTGCCTCACAGCAGATGGTAACTATGTTGTGTCAGCAAGTGAGGATTCTCATGTATACATCTGGAAAAATGAAGCCGAATTCAGACCTAACAGGGGTAAAGGTGTCACTGTCACAAACTCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCTGGTATGGTTGATGCATGGGAGATGCATAATATATTTTCTGAAGAACAAACTGAGCTTGATGATAACTTGGATGAGGTCTCATCAACCTATCATCCTCCTACCCCTGTAGAGGAAAATTTTGGTACTGAGGGTTCACAATCTGTTTCAGGTTGCAACAATAGTCCACTTCATGGGACTATTGCTAGTGCAACAAATAGTTACTTTTTTGATAGAATTTCCGCAACATGGCCAGAGGAAAAACAACTTCCAACTGCAAGGGACCGAAGTCCTCGTGTCAGTTTCGATTTATCTAATGGGGTGAATCAGAACATGTCAGCTTGGGGTATGGTGATTGTAACTGCCGGCCTTCAAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCATTTCGTATATAA 2628 0.4456 MTTKPVEKKGHELDDQNDHENLCFYDSNDRLLSSCSCSTSTSDDDDTTTPKNDTTNLKNDTSNPNSPTHVLHKFSFSNMCQYDVWISEPSSVSERRSQLLRQFGLADRSSSAAVISRSISSHHRHHTITDNSNCAAATSGIFRLKSDGGADRGCNNKYCSCSNNCFSSDQCESEALSVNNSNNGANGNGVNCKHVLGEICKRVNGDEGLECNGVEEQVCRIRDLDNGKEFVVKEVREDGMWNKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEEGNGDFVDLNVKGNVDVAVGGGGGGDGYKMKKKGSWLKSIKSVASVVKGHKEKRSGDERDTSSSEKGGRRSSSATDDSQDGGSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHDGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKPEDGNVNMLLVANGSPEPALLSPSMDNHPEKRRGRSSVSRKSLSLDQILVPETVFALTEKPICSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWNLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYMPDGQAALVGSYKGSCHLYNTSENKLQQKSQINLQNRKKRSNHRKITGFQFSPGSSSEVLITSTDSRIRVVDGVDFVHKFKGFRNANSQISACLTADGNYVVSASEDSHVYIWKNEAEFRPNRGKGVTVTNSYEHFHCKDVSVAIPWPGMVDAWEMHNIFSEEQTELDDNLDEVSSTYHPPTPVEENFGTEGSQSVSGCNNSPLHGTIASATNSYFFDRISATWPEEKQLPTARDRSPRVSFDLSNGVNQNMSAWGMVIVTAGLQGEIRTFQNFGLPFRI* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01852 875 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Rops3g01852 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 535 - -
Rops3g01852 875 FunFam Transducin/WD40 repeat-like superfamily protein 346 451 - -
Rops3g01852 875 MobiDBLite consensus disorder prediction 39 66 - -
Rops3g01852 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 541 IPR001680 GO:0005515
Rops3g01852 875 Pfam WD domain, G-beta repeat 537 574 IPR001680 GO:0005515
Rops3g01852 875 Pfam WD domain, G-beta repeat 672 709 IPR001680 GO:0005515
Rops3g01852 875 Pfam WD domain, G-beta repeat 496 532 IPR001680 GO:0005515
Rops3g01852 875 Pfam WD domain, G-beta repeat 388 420 IPR001680 GO:0005515
Rops3g01852 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 575 - -
Rops3g01852 875 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Rops3g01852 875 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Rops3g01852 875 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Rops3g01852 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 575 IPR001680 GO:0005515
Rops3g01852 875 PANTHER WD REPEAT DOMAIN 44 15 873 IPR040324 -
Rops3g01852 875 MobiDBLite consensus disorder prediction 325 351 - -
Rops3g01852 875 FunFam WD repeat-containing protein 44 482 748 - -
Rops3g01852 875 SMART WD40_4 494 532 IPR001680 GO:0005515
Rops3g01852 875 SMART WD40_4 382 421 IPR001680 GO:0005515
Rops3g01852 875 SMART WD40_4 577 615 IPR001680 GO:0005515
Rops3g01852 875 SMART WD40_4 668 709 IPR001680 GO:0005515
Rops3g01852 875 SMART WD40_4 628 667 IPR001680 GO:0005515
Rops3g01852 875 SMART WD40_4 535 574 IPR001680 GO:0005515
Rops3g01852 875 MobiDBLite consensus disorder prediction 455 475 - -
Rops3g01852 875 Gene3D - 378 733 IPR015943 GO:0005515
Rops3g01852 875 MobiDBLite consensus disorder prediction 325 368 - -
Rops3g01852 875 SUPERFAMILY WD40 repeat-like 383 711 IPR036322 GO:0005515
Rops3g01852 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 422 - -
Rops3g01852 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 430 IPR001680 GO:0005515
Rops3g01852 875 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01852 Rops-Chr3 32206926 32214180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01852 488 716 U-box Gene Family AT1G04510 26.400 8.50e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01852 K20241 - gmx:100806518 1117.45