Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01847 ATGTGGTTTGTGATGTCAGTTTCCAAACTAGTCTATTTTCTTATCTTGGGGTTTCTGGCTTTGAATTGCTTTGAAGAGTTTGGATCCAACGCTCAACTTATACCACTAGATGAAGTGAAAGCTCTACAAGCAATATCGGATAAACTAAAGAACGTGAATTGGAAAGTCACAGAACGTTCCTGCATAGAGGATGGAAGCTTTGGCAATATGAATATAAATGATGACATCGTGAGGAATGTCACGTGCGATTGCAATTTCGAAAATAGCACCTTATGCCATATTACCAACATCTTTCTCAAGGGTCAAAATATATCAGGAGTTATGCCCAGTGAATTTGGAAATCTTACACAACTTAAAGTACTTGATCTCACTCGAAACTATCTCAATGGCTCAATTCCAACGAGTTTTGCTCGCAATTCGCTAGTCGTTTTGTCTCTTCTGGGAAACCGACTAAGTGGTCCAATTCCCACAGAAATTGGTGATATTGCTAGCCTGGAGGAACTGGTCTTAGAAAACAATCAACTCGGAGGACCACTTCCTCCAAGTCTTGGAAATTTGAGCAAGTTGAAGAGACTACTTCTTTCTGCAAATAATTTTACAGGGACAATACCAGAAACATTTGGCAACCTAAAGAATCTCACTGATTTTAGAATAGATGGAAGCAGTTTATCTGGTCAGATACCCAGATTTATTGGGAACTGGACCAAACTAGACAGATTGGATATGCAGGGAACATCTATGGAAGGCCCAATTCCTTTCACCTTATCAGAGTTGAAGCTTTTGACTGAATTGAGAATAACTGATTTGAATGGACCAACTATGACATTTCCTGATCTGAATGATTTGAAAAACATGAAACGACTGGAATTGAGAAACTGCTTAATCACTGGTCCCATTCCAGATTACATTGGTGAAATGGAAAGATTAGTTATTTTAGACTTGAGCTTCAATAGGTTGACTGGCTCAATCCCAAATTCAATCCAGGGATTGAAAAAGCTTGATTACATGTTTCTGACTAATAATTCTCTGAGTGGACCAATTCAAGACTGGATACTGAACTTCAAAATTAAGATAGATTTATCTTACAACAATTTTACCAAGTCTTCTGCATCTAACTGCCAGCTCTCTGATCTGAACTTGGCTTCAAGCCATTCTTCTTCAGCAGTCACTTCACCTTCAACTTTTTGTTTGAAGAGGAACCTACCCTGTGCAGGAAAACCCCAATATCATTCATTGTTCATAAACTGCGGAGGACCTGAGGGGGATTTTGAGGACAATCACTATGTAGGTGACCTCCTTCAAGAAGGCATTTCAAACTTTGTTCTTAGAAATGAAGGACAATGGGCTGATAGCAGCACAGGAGTGTATCTTGGAAATGTTAATGCAGATTATACAGCACAAAATACATTGTCTTTGAATATTAGTGGACCAGAATACTATCAAACTGCACGCCTTTCCCCTCTGTCACTTAATTACTATGGCCTTTGTTTGGTGAATGGTAATTATAAAGTGAAGCTCCATTTTGCTGAGATAATGTTTACTGATGACCAGACTTTTAGCAGTCTTGGAAGGCGCATATTTGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATGGAAGCAGCTGGTGGAGTTGGAAAGGGCGTCACTAGGGAATTTGATGTTGATGTTAATGATGGAACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTACTGCGATTCCTAACAGAGGTGTATATGGACCTCTTATATCTGCTATTACTATAACACCAAACTTCAAAGTTTCTTCAAAAGGGCTGTCTGCTGGAGCTATTGTAGGAATAGCGGCTGCATCATGTGTGCTTGTTATACTGATACTGGTTGCCCTTTGGAAGATGGGTTTCCTTGGAGGGAAAGATACAACAGACAAAGACCTTCTAGATCTGAAAACGGGTTATTTCAGCTTAAGACAAATTAAAGCAGCCACTAATAACTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGGCCAGTATACAAGGGTGTGCTGTCAGATGGTGATGAGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAACCGGGAATTTGTTAATGAAATTGGAATGATATCTGCTTTGCAACATCCAAATCTTGTGAAGCTTTATGGCTGCTGCATTGAAGGAAACCAGTTGCTGCTAATATATGAATACATGGAAAACAACAGTCTTGCCCGTGCACTTTTTGGTCATGAAGAACAAAAGCTGCAGTTGGACTGGCCCACAAGAATGAAGATCTGCCTGGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTTTTACTTGACAAGGATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACACATATCAGTACACGGATAGCTGGAACAGTTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTCGGAGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCAACACAAATTACAGGCCAAAAGAGGAGTTTGTTTATCTTCTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGAATTGGTGGATCCTAGTCTTGGCTCAAGGTACTCCCAAGATGAGGCAATGAGAATGCTGAGCTTGGCACTGTTATGCACCAATCCATCTCCCACTCTGAGACCATCCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCAATCCAAACACCAATAATCAATCGCAGTGAGAGTAGCCAAGATGCACGATTTAAAGCCTTTGAGTGGCTATCACAGGACAGCCAAACTCTTGTTTCTTCTACCTTCTCACACGAAAGTACAGAGCAAAGACATAGATCAGCAGATGGGCCATGGGTTGATTCCTCCATATCCCTTCAAAATGGAGATGATTATTCAAGTAGTAAACTTCTTTGA 3036 0.4025 MWFVMSVSKLVYFLILGFLALNCFEEFGSNAQLIPLDEVKALQAISDKLKNVNWKVTERSCIEDGSFGNMNINDDIVRNVTCDCNFENSTLCHITNIFLKGQNISGVMPSEFGNLTQLKVLDLTRNYLNGSIPTSFARNSLVVLSLLGNRLSGPIPTEIGDIASLEELVLENNQLGGPLPPSLGNLSKLKRLLLSANNFTGTIPETFGNLKNLTDFRIDGSSLSGQIPRFIGNWTKLDRLDMQGTSMEGPIPFTLSELKLLTELRITDLNGPTMTFPDLNDLKNMKRLELRNCLITGPIPDYIGEMERLVILDLSFNRLTGSIPNSIQGLKKLDYMFLTNNSLSGPIQDWILNFKIKIDLSYNNFTKSSASNCQLSDLNLASSHSSSAVTSPSTFCLKRNLPCAGKPQYHSLFINCGGPEGDFEDNHYVGDLLQEGISNFVLRNEGQWADSSTGVYLGNVNADYTAQNTLSLNISGPEYYQTARLSPLSLNYYGLCLVNGNYKVKLHFAEIMFTDDQTFSSLGRRIFDVSIQGFKYLKDFNIMEAAGGVGKGVTREFDVDVNDGTLEIHLYWAGKGTTAIPNRGVYGPLISAITITPNFKVSSKGLSAGAIVGIAAASCVLVILILVALWKMGFLGGKDTTDKDLLDLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGDEIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGHEEQKLQLDWPTRMKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSRYSQDEAMRMLSLALLCTNPSPTLRPSMSSVVSMLEGKTPIQTPIINRSESSQDARFKAFEWLSQDSQTLVSSTFSHESTEQRHRSADGPWVDSSISLQNGDDYSSSKLL* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01847 1011 Gene3D Phosphorylase Kinase; domain 1 635 740 - -
Rops3g01847 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 203 270 - -
Rops3g01847 1011 ProSiteProfiles Protein kinase domain profile. 665 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01847 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 38 202 - -
Rops3g01847 1011 Gene3D Ribonuclease Inhibitor 273 388 IPR032675 -
Rops3g01847 1011 SMART serkin_6 665 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01847 1011 Gene3D Transferase(Phosphotransferase) domain 1 741 956 - -
Rops3g01847 1011 SUPERFAMILY L domain-like 76 375 - -
Rops3g01847 1011 Gene3D Ribonuclease Inhibitor 38 164 IPR032675 -
Rops3g01847 1011 Gene3D - 410 598 - -
Rops3g01847 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Rops3g01847 1011 Gene3D Ribonuclease Inhibitor 167 272 IPR032675 -
Rops3g01847 1011 SUPERFAMILY Protein kinase-like (PK-like) 650 951 IPR011009 -
Rops3g01847 1011 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
Rops3g01847 1011 Pfam Leucine rich repeat 93 151 IPR001611 GO:0005515
Rops3g01847 1011 Pfam Protein tyrosine and serine/threonine kinase 669 935 IPR001245 GO:0004672|GO:0006468
Rops3g01847 1011 MobiDBLite consensus disorder prediction 974 995 - -
Rops3g01847 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 966 - -
Rops3g01847 1011 CDD STKc_IRAK 671 938 - -
Rops3g01847 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 271 394 - -
Rops3g01847 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 409 598 - -
Rops3g01847 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 637 740 - -
Rops3g01847 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 948 - -
Rops3g01847 1011 Pfam Malectin domain 412 593 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01847 Rops-Chr3 31965434 31977876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01847 1 998 Receptor kinase-like Gene Family AT1G53440 62.018 0.0 1229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01847 PK_Tyr_Ser-Thr 6.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01847 - - gmx:100815226 1615.51