Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01846 ATGGATGAAGTTAATGCATACGACCCTATTCGCGTTGCTGTGACCGTGGAATCTGTATTATTTGAGAAGTGGGGTCCATCAAATGGGGCCCAAAAGGTCAAGTATAGGTCTTTAATGTATAACCTTAAGGATCCAAATAATCCAGATTTCCGAAGAAAAGTGCTACTTGGTATTGTTGAGCCACAGCGGCTGATCAACATGAGCGCATCGGAAATGGCTAGTGAGCAAAGGCTTGCTAACTCGTGTTGCTTCTGGGCTCTAAGGTACACTACGAGTGTGGAAAATGGAAGTCTTGTGATAGGTAAGAAATCAACGACTTCTGCAGCAGGTGGTTCCCTCACCCACGTTGTTGATCATGTGGATTTGGAGCCATGA 375 0.4507 MDEVNAYDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMYNLKDPNNPDFRRKVLLGIVEPQRLINMSASEMASEQRLANSCCFWALRYTTSVENGSLVIGKKSTTSAAGGSLTHVVDHVDLEP* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01846 124 ProSiteProfiles TFIIS central domain profile. 1 75 IPR003618 GO:0006351
Rops3g01846 124 Gene3D - 1 75 IPR036575 GO:0006351
Rops3g01846 124 Pfam Transcription factor S-II (TFIIS), central domain 5 77 IPR003618 GO:0006351
Rops3g01846 124 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 5 76 - -
Rops3g01846 124 SMART mid_6 1 81 IPR003618 GO:0006351
Rops3g01846 124 SUPERFAMILY Elongation factor TFIIS domain 2 7 75 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01846 Rops-Chr3 31895377 31895751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01846 65 123 Homeobox Transcription Factor Family AT1G30490 32.184 9.04e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01846 K03145 - gmx:100811982 135.576