Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01842 ATGGGAGTACCAGAGAAGGACCCTCTTGCACAATTAAGCTTACCTCCTGGTTTCAGATTTTACCCCACTGATGAGGAGCTTCTGGTTCAGTACCTATGTCGTAAGGTTGCAGGGTACCATTTTTCTCTTCCAATAATTGGCGATGTTGATTTGTACAAGTTTGATCCTTGGGTTCTTCCAGGCAAGGCAATTTTTGGTGAGAAAGAATGGTACTTTTTTAGCCCAAGAGATAGGAAGTACCCGAATGGTTCACGACCAAACAGAGTTGCTGGTTCTGGGTATTGGAAAGCAACTGGAACTGACAAAATCATCACCACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGCAAAGCACCAAAAGGCACCAAAACTAATTGGATTATGCACGAGTATAGACTTCTCGATTCTTCAAGAAAGCACAACCTTGGCAGCTCCAAACTTGATGATTGGGTTCTGTGTCGCATTTACAAGAAGAATTCGAGTTCACAAAAGGATGTGCTGCCAACAACCTTTTCAAGCAAAGAATACAGCAATGGATCATCACCTTCTTCATCATCCCACGTGGATGACATGCTCGAATTGCCGGAAATCGATGACCGGAGATTTGCCCTGCCACGTGTGAACTCACTCAGAACACTCGGGTTTCAGAACATGGGTACTGGAACTTTTTCAGACTGGGTTAACCCAACGGATCTGGATTCGGTACCCGAGTTTGTACTTGGGAGCCAGGGTCATGGGATGATGAATTATGGTTGCAATGACTTTTATGTCCCTTCGACGCCACCGTTCGGCCACGTGGACTTGTCGGCGGCACCCAAGAACCTGACCGAGGAGGAGGTTCAAAGTGGCATGAGAACCCATCGGATTACCGAGAGTTCCGGGTATTTGAATCCGAATGTGTTCACGCAGCAATTACTACCGGGTTCGGTCGACCCGTTTGGATTCGGGTACCCGGATCAGAGAAGTGGGTTCGGGTTGATATGA 1002 0.4651 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLPIIGDVDLYKFDPWVLPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKHNLGSSKLDDWVLCRIYKKNSSSQKDVLPTTFSSKEYSNGSSPSSSSHVDDMLELPEIDDRRFALPRVNSLRTLGFQNMGTGTFSDWVNPTDLDSVPEFVLGSQGHGMMNYGCNDFYVPSTPPFGHVDLSAAPKNLTEEEVQSGMRTHRITESSGYLNPNVFTQQLLPGSVDPFGFGYPDQRSGFGLI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01842 333 FunFam NAC domain-containing protein 72-like 23 169 - -
Rops3g01842 333 MobiDBLite consensus disorder prediction 176 195 - -
Rops3g01842 333 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Rops3g01842 333 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Rops3g01842 333 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Rops3g01842 333 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Rops3g01842 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 183 - -
Rops3g01842 333 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01842 Rops-Chr3 31820178 31823084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01842 1 283 NAC Transcription Factor Family AT4G27410 63.607 4.32e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g01842 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01842 - - gmx:732639 503.442