Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01841 ATGGAAAGCACCGACTCATCAACGGGTTCGCATCAACCGAACCTGCCACCAGGGTTTCGGTTCCACCCTACAGATGAGGAGCTCGTGGTTCACTATCTCAAGAAGAAGGTTGATTCTGCTCCTCTCCCTGTTGCCATCATCGCTGAGATCGATCTCTACAAGTTTGATCCATGGGAGCTACCTGCTAAGGCATCGTTTGGTGTTGAAGAGTGGTACTTTTTTAGCCCCAGGGACAGGAAGTATCCTAACGGTGCCAGGCCAAACAGGGCCGCAACTTCTGGGTATTGGAAGGCTACTGGAACTGATAAACCTGTTTTGACCTCTGGTGGAACCCAAAAGGTTGGTGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAACCACCAAGAGGGATAAAAACTGATTGGATCATGCATGAATATCGTGTTGCTGATAATAAGCCTAACAACAAGCCTCTTGGACGTGACTTGGGCAACAAGAAAAAGAACCCTCTGAGGCTGGATGATTGGGTGTTATGCCGGATCTACAAGAAGACCAATACACACAGTTCACCTATGGACCATGAAAAGGATGATTCCATGGATGACATGATTGGAGGGGTACCTTCTTCAATCAACGTGGGCCACATGAATGCGAGACTTCACCTTTCAAACATGTCCACAAGCTACAGTGGTGCATTGTTGGAAAATGACCCAAACATGTTAGAAGGTGTGATGGTAAGCAATGGTGGGATCAACAAAACAAGTGCCATATTGGACACCTCAAACTCCAAGGCAGAGCTTCCTTTTGTCCCATACTCTTTAAACACTTCAGCATCAAAAAGAACACTCTCATCATTGTATTGGAATAATGAGGATGTGGCTGGCACCTCTTTATCTAACAAGCAGTTCAGTTTGGACTATGCTAGGAATGGCAATATTGTGAGGAGTGAAGAAAATGGTACTAATGGATCCATTACCACTCTGCTTAACCAGCTCCCACAAACACATTCATTGCACCAACAAACAATGATGGGGTCTATAGGAGATGGGCTACTTCGGACACCACATCAAATACAAGGGATGAATTGGTATGGTTAA 1077 0.4522 MESTDSSTGSHQPNLPPGFRFHPTDEELVVHYLKKKVDSAPLPVAIIAEIDLYKFDPWELPAKASFGVEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKSLVFYGGKPPRGIKTDWIMHEYRVADNKPNNKPLGRDLGNKKKNPLRLDDWVLCRIYKKTNTHSSPMDHEKDDSMDDMIGGVPSSINVGHMNARLHLSNMSTSYSGALLENDPNMLEGVMVSNGGINKTSAILDTSNSKAELPFVPYSLNTSASKRTLSSLYWNNEDVAGTSLSNKQFSLDYARNGNIVRSEENGTNGSITTLLNQLPQTHSLHQQTMMGSIGDGLLRTPHQIQGMNWYG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01841 358 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g01841 358 PANTHER NAC TRANSCRIPTION FACTOR 56 15 217 - -
Rops3g01841 358 FunFam NAC transcription factor 56 24 182 - -
Rops3g01841 358 SUPERFAMILY NAC domain 7 177 IPR036093 GO:0003677|GO:0006355
Rops3g01841 358 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Rops3g01841 358 Gene3D NAC domain 24 182 IPR036093 GO:0003677|GO:0006355
Rops3g01841 358 ProSiteProfiles NAC domain profile. 15 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01841 Rops-Chr3 31774215 31776106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01841 1 357 NAC Transcription Factor Family AT3G15510 50.914 4.96e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g01841 NAM 4.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01841 - - vra:106763825 561.607