Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01840 ATGGGGCAATCATTGAGAGTGTCAGACACCGTTGTTTCTCACGGTGGGAACTTCGCACTGGGCTTTTTCTCCAGAAACACACAGAATTCCACAAAGTACTACTTGGGTATATGGTTTATAAAGGTTCCAAACGACAAGATTGTTTGGGTTGCTAACAGAGATTATCCATTCCACACTTCCTCTGCCATTCTTACCTTTCAACATGATGGAAACATGGTCATCATGGATGGACCAGTGACTTACCGCATGAACAGCGTTCCAAACAACTATAGTGCCTCTGTCAGGCTCTTGGATTCAGGAAACTTGGTACTGCTGAATAACTCCAACCAAGTAATTTTGTGGCAGAGTTTTGATAATCCAACAGATACCCTTCTGCCTGGAATGAACTTAGGACAGGATAAGGTGTCTGGATACACTTGGTCATTGAGGTCATGGAAAAGTGCAGACGACCCTGCTACTGGAGCTTTCTCCCTCGAGTATGATTCTGGCATGGAGAGTCTAATTGTGAACAAGGGATCTAATGTGTCCGGGATTGATGACCGTTCCAATGTTTCTATTCAGGGTGTTATTGACCGAACAGGTCTGGTACGAAACAGCATGGGTTATTTCACTTGGCCAGGTCATAGCAATTCTCGGGTGGTACTGGAAGTGTCTGGGGTTGTTAACCACCAGTATTGGTCAGAGGAAGCTAAGCGTTGGGTTTCTCTGTGCGGAACCATGTGTGGAGTTTTTTCCATTTGTAATCCGCTAGCTCTTGACCCTTGCCGCTGTCTTCATGGTTTCGAACCGTCTGATGCTCATTCTTGGAGGCAGGGGATCACATCCGCTGGCTGTGTCAGGAAAACAGAGTTGTCTTGCAGCAACAAAAGCGGTAACAGTAATGATGCATTCTTCAACATCAGTAACGTGGAATTACCTCCTCAAGGAATCGACATGTTTGAGACAGATACTGCTAGAAAATGTAAAAGCAGTTGCTCAAGCACTTGTTCTTGTGTTGGTTATGTTTATGATTTTAATGGTACCTGTCAGTTATGGCTTGAGCCACTACTGAGTTTCAAGAACATCTCAACTGATGTTGAAAATGCTAACAATAATAATCCAAGTTTTTATCTCAGACTTGCTTCCTCTGAATTCGTTACCACTCGTAAGTTGAACGAACCTCCTTTTGCTTCACGAGCTTTCATTTTGTTTCGCAATTTGTATCCTATGGGTAAATTATTGAATGGGGATGAGGTTGCTGTAAAAAGACTATCCCAAAGATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACACAATAATCTTGTTCGACTTTTAGGCTGCTGCATTGATCGAAATGAAAAGATGTTGATTTATGAATTTATGCCTAAGAAAAGCTTGGATTGCTTTCTTTTTGACGCAACAAAAAGAAGGATGCTAGATTGGGGAACACGAATTCAGATAATTGATGGGATTGCCCAAGGACTCCTTTATCTTCATCGATATTCCAGGTTTCGGATCATTCATCGAGATTTAAAAGCTAGCAACATATTGTTAGACGCCAATATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGTGAGAATGAACTTCAAGCAAATACAAATCGAATAGTTGGAACTTATGGCTACATGGCTCCTGAATATGCTATGGAAGGCCTTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTCCTATTGTTAGAGATCGTAAGTGGCAAGAAGAATACAGGTTGTTATCAAACAAAGTCCCTCAATCTTCTTGGATATGCTTGGGATTTATGGACAAGCAATTTGGGCATGGACCTGATGGATCCAGCACTAGAAGATATCTCCAATAAGCAGGTGGTACCAAGATATGTGAACATAGGACTTCTCTGTGTTCAAGAAAATCCGGCAGATAGGCCAACCATGTGTGATGTTGTATCAATGATTGGCAATGACACTGTTGCCCTTCCTTCTCCGAAGCCACCTGCATTTCTAAATGTGGGAGGGTTGTTTATTGTCAAATTTGGTTTTGACAAAAACAGGACTTCAGATCAATCTAGGGAAGAAGTTTGTTCCACTTTCAGGGATTTGATTCAAGTCGCTTTGAAAGAAGGCAGACTCAAGTTTGATGACAAGAAGCAACCTATGAAGGTAGATACTAACCCTTTCGAAGTGCAGGCAAACTATGTTGAACCCATTGGTGTTGATATTTTCATGGCTAAATTAAAAGAAGAAATAGTCGAGGCAAAAGACATTGAAGTCACCATTGATGAGTTTAAGCAAGTTGAGGCAGAAATTTATCTAAAAAATGGTGATACATTAGTCGAATTTCTGACTATGAAGCAAGACAATGATCATGAAGTCATGTGA 2394 0.411 MGQSLRVSDTVVSHGGNFALGFFSRNTQNSTKYYLGIWFIKVPNDKIVWVANRDYPFHTSSAILTFQHDGNMVIMDGPVTYRMNSVPNNYSASVRLLDSGNLVLLNNSNQVILWQSFDNPTDTLLPGMNLGQDKVSGYTWSLRSWKSADDPATGAFSLEYDSGMESLIVNKGSNVSGIDDRSNVSIQGVIDRTGLVRNSMGYFTWPGHSNSRVVLEVSGVVNHQYWSEEAKRWVSLCGTMCGVFSICNPLALDPCRCLHGFEPSDAHSWRQGITSAGCVRKTELSCSNKSGNSNDAFFNISNVELPPQGIDMFETDTARKCKSSCSSTCSCVGYVYDFNGTCQLWLEPLLSFKNISTDVENANNNNPSFYLRLASSEFVTTRKLNEPPFASRAFILFRNLYPMGKLLNGDEVAVKRLSQRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPKKSLDCFLFDATKRRMLDWGTRIQIIDGIAQGLLYLHRYSRFRIIHRDLKASNILLDANMNPKISDFGMARIFGENELQANTNRIVGTYGYMAPEYAMEGLFSIKSDVFSFGVLLLEIVSGKKNTGCYQTKSLNLLGYAWDLWTSNLGMDLMDPALEDISNKQVVPRYVNIGLLCVQENPADRPTMCDVVSMIGNDTVALPSPKPPAFLNVGGLFIVKFGFDKNRTSDQSREEVCSTFRDLIQVALKEGRLKFDDKKQPMKVDTNPFEVQANYVEPIGVDIFMAKLKEEIVEAKDIEVTIDEFKQVEAEIYLKNGDTLVEFLTMKQDNDHEVM* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01840 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Rops3g01840 797 Pfam D-mannose binding lectin 47 146 IPR001480 -
Rops3g01840 797 Gene3D - 1 117 IPR036426 -
Rops3g01840 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 117 - -
Rops3g01840 797 Pfam Protein tyrosine and serine/threonine kinase 410 656 IPR001245 GO:0004672|GO:0006468
Rops3g01840 797 SMART serkin_6 397 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01840 797 ProSiteProfiles Bulb-type lectin domain profile. 1 117 IPR001480 -
Rops3g01840 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 665 - -
Rops3g01840 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 47 151 IPR036426 -
Rops3g01840 797 SUPERFAMILY Protein kinase-like (PK-like) 407 672 IPR011009 -
Rops3g01840 797 CDD B_lectin 3 120 IPR001480 -
Rops3g01840 797 ProSiteProfiles PAN/Apple domain profile. 286 374 IPR003609 -
Rops3g01840 797 FunFam Os04g0616200 protein 403 463 - -
Rops3g01840 797 SMART ntp_6 292 373 IPR003609 -
Rops3g01840 797 ProSiteProfiles Protein kinase domain profile. 378 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01840 797 Pfam S-locus glycoprotein domain 197 264 IPR000858 GO:0048544
Rops3g01840 797 SMART blect_4 2 120 IPR001480 -
Rops3g01840 797 Gene3D Transferase(Phosphotransferase) domain 1 463 663 - -
Rops3g01840 797 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 103 688 - -
Rops3g01840 797 Pfam PAN-like domain 291 351 IPR003609 -
Rops3g01840 797 PIRSF SRK 1 401 IPR024171 GO:0004674
Rops3g01840 797 PIRSF SRK 397 704 IPR024171 GO:0004674
Rops3g01840 797 Gene3D Phosphorylase Kinase; domain 1 359 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01840 Rops-Chr3 31700200 31706517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01840 371 673 Receptor kinase-like Gene Family AT4G23190 54.723 7.30e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01840 PK_Tyr_Ser-Thr 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01840 - - pvu:PHAVU_011G149500g 833.558