Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01839 ATGTTTGGTGCAGACTCAAAACCATGGGCCCGATTTACCATAGACAAAGGTTTCTTGGCTCTTGAGAGGTTGTTGAAGGATTTTGCTGGTACATATGCCACAGGGGAACATATCTATATGATTCTAATCATCACTTCTCCTCTGCCCAATATAAGGAAAATGCATTCTGAACTTGTATTTGCTTCTACTTCATGGCAGTGGACTGCAAAAATATCTAAATGGACAAGGGCGGGGGTGGGGATGGGTAGTGTCTCCACACCCCCACGAACTAAATTTAATCTACATCCTCATCCTATACCCACAACAGCACTTTCTTTTCTTCCAAATTTTTGTTTCAAGATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGTTCAGATACCATTGACAATGTTAAAGCCAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGCAAAGGCTCATATTTGCTGGTAAGCAATTGGAGGATGGTCGCACTCTTGCAGACTACAACATTCAAAAGGAGTCCACCCTTCACCTCGTGCTTCGTCTCAGGGGTGGCATGCAAATCTTTGTTAAGACCTTGACTGGGAAGACCATCACCCTTGAGGTTGAATCCTCGGATACCATTGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGTATCCCACCAGATCAGCAGAGGCTGATTTTCGCTGGGAAACAACTTGAGGATGGAAGGACTCTAGCCGATTACAACATCCAGAAGGAATCTACTCTTCATTTGGTGCTCAGATTGAGAGGTGGCATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATTACTTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAGCAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAAGATGGACGAACCCTTGCAGATTATAACATTCAGAAGGAATCCACTCTGCATTTGGTTTTGCGCCTTCGTGGAGGCATGCAAATTTTTGTGAAGACTTTAACTGGGAAGACTATAACTTTGGAGGTTGAAAGTTCTGATACCATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCACCGGATCAGCAAAGGCTTATCTTTGCTGGGAAGCAGTTGGAAGATGGCCGCACTCTTGCTGATTATAATATCCAGAAGGAATCCACTCTGCACTTGGTTTTGCGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACCCTAACAGGGAAGACTATTACCTTGGAAGTGGAGAGCTCAGATACAATTGATAATGTGAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGATGGTCGTACCTTGGCAGATTACAATATTCAGAAGGAATCCACCCTGCATCTTGTCCTTCGCCTTCGTGGTGGTTTCTAA 1485 0.4512 MFGADSKPWARFTIDKGFLALERLLKDFAGTYATGEHIYMILIITSPLPNIRKMHSELVFASTSWQWTAKISKWTRAGVGMGSVSTPPRTKFNLHPHPIPTTALSFLPNFCFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01839 494 CDD Ubl_ubiquitin 342 417 - -
Rops3g01839 494 ProSitePatterns Ubiquitin domain signature. 444 469 IPR019954 -
Rops3g01839 494 ProSitePatterns Ubiquitin domain signature. 216 241 IPR019954 -
Rops3g01839 494 CDD Ubl_ubiquitin 190 265 - -
Rops3g01839 494 PANTHER UBIQUITIN 266 343 - -
Rops3g01839 494 SUPERFAMILY Ubiquitin-like 113 189 IPR029071 -
Rops3g01839 494 SUPERFAMILY Ubiquitin-like 265 341 IPR029071 -
Rops3g01839 494 FunFam Polyubiquitin 3 114 189 - -
Rops3g01839 494 SUPERFAMILY Ubiquitin-like 189 265 IPR029071 -
Rops3g01839 494 ProSiteProfiles Ubiquitin domain profile. 418 493 IPR000626 GO:0005515
Rops3g01839 494 ProSitePatterns Ubiquitin domain signature. 368 393 IPR019954 -
Rops3g01839 494 PRINTS Ubiquitin signature 145 165 IPR019956 -
Rops3g01839 494 PRINTS Ubiquitin signature 124 144 IPR019956 -
Rops3g01839 494 PRINTS Ubiquitin signature 166 187 IPR019956 -
Rops3g01839 494 FunFam Polyubiquitin 3 190 265 - -
Rops3g01839 494 ProSitePatterns Ubiquitin domain signature. 140 165 IPR019954 -
Rops3g01839 494 FunFam Polyubiquitin 3 418 493 - -
Rops3g01839 494 Gene3D - 2 73 - -
Rops3g01839 494 CDD Ubl_ubiquitin 418 493 - -
Rops3g01839 494 SUPERFAMILY Ubiquitin-like 417 493 IPR029071 -
Rops3g01839 494 Pfam Ubiquitin family 420 491 IPR000626 GO:0005515
Rops3g01839 494 Pfam Ubiquitin family 268 339 IPR000626 GO:0005515
Rops3g01839 494 Pfam Ubiquitin family 116 187 IPR000626 GO:0005515
Rops3g01839 494 Pfam Ubiquitin family 344 415 IPR000626 GO:0005515
Rops3g01839 494 Pfam Ubiquitin family 192 263 IPR000626 GO:0005515
Rops3g01839 494 FunFam Polyubiquitin 3 266 341 - -
Rops3g01839 494 SMART ubq_7 342 413 IPR000626 GO:0005515
Rops3g01839 494 SMART ubq_7 114 185 IPR000626 GO:0005515
Rops3g01839 494 SMART ubq_7 418 489 IPR000626 GO:0005515
Rops3g01839 494 SMART ubq_7 190 261 IPR000626 GO:0005515
Rops3g01839 494 SMART ubq_7 266 337 IPR000626 GO:0005515
Rops3g01839 494 SUPERFAMILY Ubiquitin-like 341 417 IPR029071 -
Rops3g01839 494 ProSiteProfiles Ubiquitin domain profile. 114 189 IPR000626 GO:0005515
Rops3g01839 494 CDD Ubl_ubiquitin 266 341 - -
Rops3g01839 494 Gene3D - 111 189 - -
Rops3g01839 494 Gene3D - 418 494 - -
Rops3g01839 494 Gene3D - 266 341 - -
Rops3g01839 494 Gene3D - 190 265 - -
Rops3g01839 494 Gene3D - 342 417 - -
Rops3g01839 494 ProSiteProfiles Ubiquitin domain profile. 190 265 IPR000626 GO:0005515
Rops3g01839 494 ProSiteProfiles Ubiquitin domain profile. 342 417 IPR000626 GO:0005515
Rops3g01839 494 CDD Ubl_ubiquitin 114 189 - -
Rops3g01839 494 ProSiteProfiles Ubiquitin domain profile. 266 341 IPR000626 GO:0005515
Rops3g01839 494 FunFam Polyubiquitin 3 342 417 - -
Rops3g01839 494 ProSitePatterns Ubiquitin domain signature. 292 317 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01839 Rops-Chr3 31651365 31667887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01839 418 494 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.89e-46 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01839 - K08770 han:110936586 741.495