Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01828 ATGAAGGAACAGAGATATATGGCGATCCCAGAAGTTGCAAAGTGGGCTCTATTGGTTCTAGCTTTTCTTCTATACTTGGGTAAGGAATCATTTGCCTCATTCACTCCCATTGATAATTATTTGGTAGTTTGTGGTTCTTTCAACAACATCACCTTTCAAGGTAGAACTTTCATTCCTGACTCTCAACTTTTTGAAATAAAAGCCAACAAATCTGATGCATTTACCTCTAAACTCAGTGTCCCTTCTCCACTCTATCAATCAGCTCGACTCTTCTTAGACAAGGCTTCATATATATTCAGAATTGAGCAACTAGGAAGGCATTGGATCCGTCTCTATTTTCACCCTTTCACTGATTTGAACCAAAGCTTGACCAATGCCTCAATAACTGTAGTCACTGAAAGTTTTGTGCTTCTCAATAATTTCACTTTCATGAACTATAATGGCTCTCACTTGTTCAAGGAGTTTGCAATTAACATCACATCAAATGAGTTATCTCTCACATTCATCCCTCACAACAATTCACTTGTCTTTGTTAATGCCATTGAAGTTGTCTCCATACCTGATGAGCTCTTCCCTGACAAAATAGTTGTGGCTCTAAACCCATCTAGCTTTTTTCAACAACTTTCAAAATCTGCCCTTGAAACAGTTTACCGGGTGAATGTTGGGGGTGCATCTCTCAGTGCTCAAAAAGACACCTTAGGAAGGAGTTGGGAGAATGATGAAAATTACTTCCATTCTTCCACCAATTTTTCCCTTAATATTTCAATAAACCCTGCTGTCATAAAGCATCCTCATGAACCTTATATAGCACCACCATTGGTTTATGCCACAGCCAGAGCCATGGGAAATGCATCAGAGGGATCCTATTTAAATTGGGTCTTCACTGTTGATCCAAACTTTCAGTACTTTATTCGGGTGCATTTCTGTGACATCATTAGCAAGTCACTCAACAAGCTAGTTTTCAATCTATTTATAAATGGAGCCTTTGCTGTGAGAAGTCTTGACCTGTCATCCATAACTAAGGACTTTGCTGTGCCTTACTACAACGACTTCGTCTCACACTCCTCTGCAAACACTTTGAAAATAAGTGTTAGTCCTGATACAAAGGAAGACATGCTAAACGCAATCATGAATGGGGTGGAAATAATGAAGATCAGCGATGAAGTACGTATCATAGATGGGTTAAAGAAGAGATCAACAAATAGTTTTGAATTTCTGAGACATTTTACTTTCCATGGGATCCAACAAGCAACCAATGATTTTGATCCTGACCTACTAATTGGCCAAGGAGGATTTGGCAAGGTCTATAAAGGAACACTAGAAAATGGGAAAACAGTAGCCATCAAAGTAGCAAATCCTGAATCAAGACAAGGTCTCCATGAATTCCATAACGAGATAGAATTGTTACATGGACTTCATCATCCAAACCTTGTCTCTCTTGTAGGTTGCTGTAGTGAAGACTCAGAAATGATTCTAGTATATAAATATATGGCTAATGGATCTCTCAGCAATCATCTCTATGGGAGAGACTTTGTTCCTCTCTCATGGAAGCAACGCCTTGGGATATGCATTGGTGCTGCAAAGGCACTTTGTTATCTTCATACTGGAGCTAAACAAAGCATAATTCATCGTGATGTGAAGGCTTCAAACATTCTCTTGGATGAAAATCTTGTGCCAAAAGTTGCTGATTTTGGCATATCAAAAAGGGGTCCTCTTCTTGATAAGAGCCATGTGACAACCAATGTAAAGGGTAGCTTTGGTTATGTTGATCCTGAGTATTTTAGAACTAAGTATCTCACTAAGAAATCAGATGTTTACTCATTTGGGGTGGTGTTGATTGAAATTATGTGTGGCAAGCCTGCTTTAGATGATGGCCGTCCAACACAGCAAATGAATTTGGCTTTGTGGGCTTTAAGCTGCCATGTCTTCCATGAATTGATGGATCCATATTTGATTGGAAAAGTGAATATGGAATCTCTAAACAAGGTTTCTGAGTTGGCTTGGAAGTGCTTGGAGGAGCGTCGGGTGAATAGGCCACCTATGGGGTATGTGTTGTGTGAACTAGAAGAGGCTCTCCATCTTGAGTTGGCATCACAAGTTTGCATTGGTAATGGGGATTCTGTTACACATGCCAATGTAGAAAATGGATTCACAGATGATATAGAAGATGTTGCTTGA 2178 0.3949 MKEQRYMAIPEVAKWALLVLAFLLYLGKESFASFTPIDNYLVVCGSFNNITFQGRTFIPDSQLFEIKANKSDAFTSKLSVPSPLYQSARLFLDKASYIFRIEQLGRHWIRLYFHPFTDLNQSLTNASITVVTESFVLLNNFTFMNYNGSHLFKEFAINITSNELSLTFIPHNNSLVFVNAIEVVSIPDELFPDKIVVALNPSSFFQQLSKSALETVYRVNVGGASLSAQKDTLGRSWENDENYFHSSTNFSLNISINPAVIKHPHEPYIAPPLVYATARAMGNASEGSYLNWVFTVDPNFQYFIRVHFCDIISKSLNKLVFNLFINGAFAVRSLDLSSITKDFAVPYYNDFVSHSSANTLKISVSPDTKEDMLNAIMNGVEIMKISDEVRIIDGLKKRSTNSFEFLRHFTFHGIQQATNDFDPDLLIGQGGFGKVYKGTLENGKTVAIKVANPESRQGLHEFHNEIELLHGLHHPNLVSLVGCCSEDSEMILVYKYMANGSLSNHLYGRDFVPLSWKQRLGICIGAAKALCYLHTGAKQSIIHRDVKASNILLDENLVPKVADFGISKRGPLLDKSHVTTNVKGSFGYVDPEYFRTKYLTKKSDVYSFGVVLIEIMCGKPALDDGRPTQQMNLALWALSCHVFHELMDPYLIGKVNMESLNKVSELAWKCLEERRVNRPPMGYVLCELEEALHLELASQVCIGNGDSVTHANVENGFTDDIEDVA* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01828 725 Gene3D Transferase(Phosphotransferase) domain 1 497 702 - -
Rops3g01828 725 FunFam Wall-associated receptor kinase 2 497 708 - -
Rops3g01828 725 ProSitePatterns Protein kinases ATP-binding region signature. 427 449 IPR017441 GO:0005524
Rops3g01828 725 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01828 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Rops3g01828 725 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 125 693 - -
Rops3g01828 725 FunFam Putative receptor-like protein kinase 39 187 - -
Rops3g01828 725 CDD STKc_IRAK 427 685 - -
Rops3g01828 725 Gene3D - 39 186 - -
Rops3g01828 725 Gene3D - 211 387 - -
Rops3g01828 725 Pfam Malectin-like domain 44 385 IPR024788 -
Rops3g01828 725 SUPERFAMILY Protein kinase-like (PK-like) 402 688 IPR011009 -
Rops3g01828 725 Gene3D Phosphorylase Kinase; domain 1 393 496 - -
Rops3g01828 725 Pfam Protein tyrosine and serine/threonine kinase 427 684 IPR001245 GO:0004672|GO:0006468
Rops3g01828 725 FunFam Receptor-like protein kinase FERONIA 212 387 - -
Rops3g01828 725 SMART serkin_6 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01828 725 FunFam receptor-like protein kinase FERONIA 387 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01828 Rops-Chr3 31456017 31458396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01828 407 697 Receptor kinase-like Gene Family AT2G21480 56.122 5.00e-107 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Rops3g01828 Malectin_like 6.3e-41 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01828 - - pcin:129313301 763.837