Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01818 ATGTATGGAGATGATGGTATGATAATTTTCAATGAAGAAGAGCTCAAAACTATCCAAGGTTTCAAGAGAGGCATTGACTATATCGAGGTTTGTTGTGGAACCACTAACAGAAGGTATGGAGATTTTGTTGCGATGCTAAGAATTGATGGCAGAGAGAATATCACTCCAGAAGAATTTGAGAAACATGCTGGAATAGAAGGGAGTGGAAGATGGAAAAGCAGCATTTGGGTTCATGAGGAAGAAGAAGACAGAGTTCCACTTACCAAGACACCTCTGCTGCAATATTATACACATCAAGCAAATGTGTCTAACTGGAAAGATGTGGCAAACCGCAAACGAAACTTTCACAGGGATGAATTCATTCGTTGTTCAAGTTGCAACAAGGAGCGCAGGTTTCGTCTCAGGAACAGGCCAGATATTCAGGTGTACCATGCTGCTGTGAATAACAAAAGTTGGACCTGTTCTGATTGGCCTAATCAAATAATAACCTGTGATCATGAAGAAGAACGACCGAGTCTTAAGGCCTGGAGGGGCTGTCCTCGTACTTCATTTTGCCAAGGCTGCTCATCTTGTTATTGTAGAGGCTGTATCAAGTGTCGCTTTGAGGACTGCAGTTGCCAAGAATGCAGAGACTTCATGCTACTTGCAGAACCTTAG 657 0.4262 MYGDDGMIIFNEEELKTIQGFKRGIDYIEVCCGTTNRRYGDFVAMLRIDGRENITPEEFEKHAGIEGSGRWKSSIWVHEEEEDRVPLTKTPLLQYYTHQANVSNWKDVANRKRNFHRDEFIRCSSCNKERRFRLRNRPDIQVYHAAVNNKSWTCSDWPNQIITCDHEEERPSLKAWRGCPRTSFCQGCSSCYCRGCIKCRFEDCSCQECRDFMLLAEP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01818 218 Pfam SAND domain 48 78 IPR000770 GO:0003677
Rops3g01818 218 PANTHER PROTEIN ULTRAPETALA 1 8 217 IPR020533 -
Rops3g01818 218 SUPERFAMILY SAND domain-like 28 79 IPR010919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01818 Rops-Chr3 31229798 31232716 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF ULT Rops3g01818 SAND 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01818 - - gmx:100818259 345.895