Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01815 ATGAACGAGAAGGCCAACGTTTCTAAGGAACTCAACGCAAGGCACAGAAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTCTTGGGGTACACATCTCAAAGGTTCGCTCTGCAACTCTGGACACCTGGCTCCCGGAGCAGGTTGCATTCATTCAATCAATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAAGGATGGGAAACCAAGATCACCTTCTAGACTGCAAGAAGAGAAAACTCCTTCACATTGGCAAAGACCTGTGGAAAGAGGTGGGCATAGTTATGCGGCTGCATCTGAGAATACTTATGAGGAAAGGAAGAAAATACAACCGTCAAATGCAATTCCTGCTACAAGAATTAGTGTCCCTGCTCCTCCCAAAGGACCTGAGCAGGTAGCTCCTGTGATAAAACCTCAGCAAATTGAGAAAGTGGAACCTGTGACATCACAACCGCAAGCTGAAACTTCACAGACTACTGGCACAGCTCAAAATTCCACTCCAAAAGTTGACTTTGCTACAGACCTTTTTGACATGTTGTCTATGGATGGTCCAAGTGAAAAGGGCTCAGGGGCAGCTGATACTACTGCTGATGATGAAAATTGGGCAGGTTTTCAATCTGCTGCAGAGGCATCGACAGCCGAGAAGACTGATACCGTGAAAACAGTCGAGAGTACACCACAATCCACTTCTGGAATTGAGGATCTATTTAAAGATTCACCGTCGGTGTCATCAAGCTTAGCTCCAGAAAAACCACAATCTACTTCTGGAATTGAGGATCTATTTAAAGATTCACCTTCGGTGACATCAAGCTTAGCTCCAGAAAAACCGCAAAAAGATGTCAAAAATGATATCATGAGCCTCTTTGAGAAGGCCAATATGGTGTCTCCATTTGCTATGCATCAACAGCAGCTGGCAATGCTGGCACAGCAACAGTCCCTTCTGATGGCTGCTGCTGCAAAATCTGCTGGTGGGGATTCCAAGTATCCTGCTAACATACAGCAACCTGGGTCCAATGTTCCTGTCCAAAATTGGTCAGCTGCTAGCCACCCAATTCCAGGAGTAATGCCCATGGGTGGTCAGGGAGATTTGCAAAAACTCATGCAGACAATGAACTTCACTTCAGCGCATCCAGAAGGGAGCTCAGTTCAGCATCCACCATCCAGTTACTATAATATGGGTCAAGTTGCCCCAGTTAATGGTACGACAACAGGAGCTAGTAAACCTCAGTCAGCAGTTCCGGTATCATCAACCACTTCAAAGAAGGCGAAGGATTATGATTTTTCCTCCTTAACTCAAGGAATGTTTTCCAAACACTGA 1497 0.4476 MNEKANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVAKDGKPRSPSRLQEEKTPSHWQRPVERGGHSYAAASENTYEERKKIQPSNAIPATRISVPAPPKGPEQVAPVIKPQQIEKVEPVTSQPQAETSQTTGTAQNSTPKVDFATDLFDMLSMDGPSEKGSGAADTTADDENWAGFQSAAEASTAEKTDTVKTVESTPQSTSGIEDLFKDSPSVSSSLAPEKPQSTSGIEDLFKDSPSVTSSLAPEKPQKDVKNDIMSLFEKANMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAGGDSKYPANIQQPGSNVPVQNWSAASHPIPGVMPMGGQGDLQKLMQTMNFTSAHPEGSSVQHPPSSYYNMGQVAPVNGTTTGASKPQSAVPVSSTTSKKAKDYDFSSLTQGMFSKH* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01815 498 CDD ArfGap 19 117 - -
Rops3g01815 498 MobiDBLite consensus disorder prediction 268 337 - -
Rops3g01815 498 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Rops3g01815 498 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Rops3g01815 498 MobiDBLite consensus disorder prediction 268 335 - -
Rops3g01815 498 MobiDBLite consensus disorder prediction 435 481 - -
Rops3g01815 498 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Rops3g01815 498 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Rops3g01815 498 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Rops3g01815 498 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Rops3g01815 498 MobiDBLite consensus disorder prediction 124 192 - -
Rops3g01815 498 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Rops3g01815 498 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Rops3g01815 498 MobiDBLite consensus disorder prediction 124 146 - -
Rops3g01815 498 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Rops3g01815 498 MobiDBLite consensus disorder prediction 204 228 - -
Rops3g01815 498 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 313 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01815 Rops-Chr3 31148682 31157581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01815 2 123 C2H2 Transcription Factor Family AT4G05330 46.154 1.02e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01815 K12486 - gmx:100807561 739.569