Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01810 ATGGTGTTATCAGCTTCGTCATGTTCATTGACGAGAAGCTCTCTAGAAGAGATGCTTGAGTCTCTTCGCCAGAGGGATGAAGAAGAACAGAAGAAAAAGGACTTGCCGCCGGCGTTGCCGTCACGGCCGGCTTCACGGGCACGGCTTCCTCCGGCACGACGGTCACTACCGAATAACTTCAAGGTAAGCGGTGATGGTGACGGTGGTGTGGTTGAGAATGGATATGGTGGTGGTAACGTAGAGAGTAAGAGGAAGGAAACAGATTTGGGACATAAGAGAAGAGGAAGCAGTTTTGGAAGCAAGAGGATGAAGAAGGAAGATGTCGAGTCACCTTACATGACACCACTTTCACCATGCAGTGATTCTATGGCTTCATCAGGGATGGTTTTGGAATTGGAGGGAGACGACACCGTTTCTTATTTCATCAAAACGAAGCTTCGTGTTTGGTGTAGGCAACCAGGAGGGCAATGGAAACTAGGATTGATACACTCAATTTCAGGAGAGGAAGCATCTGTTTTACTCTCAAGTGGAAATGTTGTGAAAGTGGCGAGATCGGAGCTCCTACCAGCTAATCCTGATATTTTAGAGAGTGTGGATGATCTTATTAAACTCGGTTATTTGAATGAGCCATCGATTCTTCACAATCTTAAGATTAGATATTCTCAGAACATGATTTATAGTAAAGCAGGGCCCATTTTAATTGCACTCAACCCTTTCAAAGACCTCCAGATTTATGGAAATGATTATATCTCAGCTTATAGGAAGGGATCTATTCATAATCCTCATGTTTATGCCATGGCAGATGCAGCTTATAACAAGATGATAAGTGATCAAGAAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGAAAGACAGAGACAGCTAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGAGAGAAAATGAAGTTTTTCAGGCAAATTGTATACTAGAAGCTTTTGGGAATGCAAAAACATCTTTGAATGACAACTCCAGCAGATTTGGAAAGTTGATTGAAATTCATTTCAGTGCCATGGGTAAAATATGCGGGGCTAAAATTCAAACATATCTGTTAGAAAAGTCAAGAGTTGTTCAACTGGCCAGCAGCGGTGAGAGGTCGTATCACATCTTTTATCAACTATGTGCTGGATCTTCAAATGGTCTTAAAGAGAGACTGAATCTTAGAGCAGCTAGTGAATATAAATATCTAAATCAGAGTGACTGCATGACAATTGATGGTGTTGATGATGCTAAAAACTTTCATCAGCTGATGAGAGCATTGGATACTATTCAAATTTCTAAAGAGGATCAAGAGCCGATCTTTAAGATGCTTGCTGCAATACTATGGCTGGGAAATATATCATTCCAAGTTACTGACAATGAAAAACACATTGAGGTTGTGGAGGATGAAGCTGTAACCAGTGCTGCCCTGCTGATGGGTTGCAGTTCCCAGGAATTAATAGCAGCAATATCTACCCATATTATCCAATCTGACAAGGATAGTATTGCCAAAAGTTTGACATTGTCACAGGCAATTGATACAAGAGATGCAATTGCAAAATTTATCTACACAAGCTTGTTTGATTGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTGGGTGAAATACATACCGGAAAATCCATAAGTATCCTTGATATTTATGGGTTTCAGTCATTCAAGAAAAACAGCTTTGAACAATTTTGTATAAATTATGCCAATGAGAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTATGAATTGGATGGCATAGATTGGACTAAAGTAGATTTTGAGGACAATCAAGAATGCTTGGATCTGTTTGAGAAGAAACCTCTTGGTCTACTCTCTTTGTTGGATGAGGAATCAAAGTTCCCTAAGGCTTCTGATTTAACATTTGCCAACAAGCTTAAGAATCGTCTGGATGCTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTCAGTGTTCGTCACTATGCAGGGGAGGTCTTGTATGATACAAATGGCTTCCTACAAAAGAACAGAGATACCCTGTCTTCTGATTCCATCCGACTCCTGTCATCATGTAATTGTAAACTGCTGCAGTTGTTCTCTGAAATGTTTAACCAGTCTCAGAAGCAATCACATTCATCCTTTGACATTGGCACATGGGACTCACGGAAGCAGAGTGTTGGAACAAAGTTCAAGGGTCAATTGTTCATATTGATGCATCATTTGGAGAGCACCACACCTCACTTTATTCGCTGCATAGAGCCAAATACTAAGCGGCTTCCTGGCATTTATGATGAGGACCTTGTCCTACAACAGATCAGGTGTTGTGGAGTTCTAGAAGTTGTTACAATTTCAAGGGCTGGGTATCCTACTCGAATGACACATCAAGAGTTTTCCACAAGGTATGGGTTTCTGCTCTCTGAGGCCAATGTATCTCAGGATTCATTGAGCATCTCAGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTACCAAGTTGGCTACACCAAACTATATCTCCGAGCAGGGCAGATTGGTGCATTGGATGATAAGAGAAAGCAGGTTTTGCAGGGAATACTTGGGATTCAAAAATGCTTCCGTGGTCATCAAGCTCGCAGTTATTTCTGTGATCTTAAGAATGGAGTGGCAACATTACAATCATTTATTCGTGGAGAAATTTTGAGAAGGAAATATGGTGTTACAATGAAGTCTTCTATAACAATTTATTCTAAGAAACTTGAGGAGATCCATGCAATCATACTATTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAGGGATTCTAGTCACTTGAATAAGTTGAGGAGTTATCATGAAAATGCAAAACCTAGACGGAAATCTCGTGTAAAGATGCCAGATATAAAGGATTTGTTCAAGGACCGGGTTCAGAATCTTCCTTCGGCTTTAGCAGAACTCCAAAAGCGGGTTTACAAGGCTGAAGCAATTGTGGAGCAAAAGGAAGAGGAAAATACTGAATTGAGGGAACAGCTAAAACAATCCGAGAAAATGAGGGTTGAATATGAGGTAAAGATGAAATCAATGGAGGAGGCATGGCAAAAGCAGATGGCATCCTTGCAAATGAGTCTTGTTGCTGCAAGAAATGCAACTGCTCAACCTGTAAGACATGATCTTGTGTCGCTTCGCTGCTATGATTCTGAAGATGCTACTTCCATGGGATCTCGAACACCTGGTGGGAGCACACCGAAGCTTCCTAGTAGTTTCTCTGTCTCTGATGCAGGGAGACATGCTAATGGTACATTGACAACAGTCAGCAATCTGATGAAGGAATTCGAGCAGCGAAGACAGACCTTTGATGATGAAGTGAAAGCTCTGAATGATGTTAAACCTGGGCAGTCTGCCAACCCGAATTCCGCCGAAGAACTTCGGAAACTTAAACATAGATTTGAGGGATGGAAGAAACAATACAAGATTAGATTAAGGGAGACAAAAACAAAGGTTAGTAAATTAGGGAATTCAGAAATGGAAAAAAGTAAGCGGTCATGGTGGGGGAAATTAAGCTCAAAAACATAA 3597 0.4101 MVLSASSCSLTRSSLEEMLESLRQRDEEEQKKKDLPPALPSRPASRARLPPARRSLPNNFKVSGDGDGGVVENGYGGGNVESKRKETDLGHKRRGSSFGSKRMKKEDVESPYMTPLSPCSDSMASSGMVLELEGDDTVSYFIKTKLRVWCRQPGGQWKLGLIHSISGEEASVLLSSGNVVKVARSELLPANPDILESVDDLIKLGYLNEPSILHNLKIRYSQNMIYSKAGPILIALNPFKDLQIYGNDYISAYRKGSIHNPHVYAMADAAYNKMISDQENQSIIISGESGSGKTETAKIAMQYLAALGGGSCGRENEVFQANCILEAFGNAKTSLNDNSSRFGKLIEIHFSAMGKICGAKIQTYLLEKSRVVQLASSGERSYHIFYQLCAGSSNGLKERLNLRAASEYKYLNQSDCMTIDGVDDAKNFHQLMRALDTIQISKEDQEPIFKMLAAILWLGNISFQVTDNEKHIEVVEDEAVTSAALLMGCSSQELIAAISTHIIQSDKDSIAKSLTLSQAIDTRDAIAKFIYTSLFDWLVEQVNKSLEVGEIHTGKSISILDIYGFQSFKKNSFEQFCINYANERLQQHFNRHLFKLEQEDYELDGIDWTKVDFEDNQECLDLFEKKPLGLLSLLDEESKFPKASDLTFANKLKNRLDANPCFKGERGRAFSVRHYAGEVLYDTNGFLQKNRDTLSSDSIRLLSSCNCKLLQLFSEMFNQSQKQSHSSFDIGTWDSRKQSVGTKFKGQLFILMHHLESTTPHFIRCIEPNTKRLPGIYDEDLVLQQIRCCGVLEVVTISRAGYPTRMTHQEFSTRYGFLLSEANVSQDSLSISVAVLQKFNIPSEMYQVGYTKLYLRAGQIGALDDKRKQVLQGILGIQKCFRGHQARSYFCDLKNGVATLQSFIRGEILRRKYGVTMKSSITIYSKKLEEIHAIILLQSVIRGWLVRRDSSHLNKLRSYHENAKPRRKSRVKMPDIKDLFKDRVQNLPSALAELQKRVYKAEAIVEQKEEENTELREQLKQSEKMRVEYEVKMKSMEEAWQKQMASLQMSLVAARNATAQPVRHDLVSLRCYDSEDATSMGSRTPGGSTPKLPSSFSVSDAGRHANGTLTTVSNLMKEFEQRRQTFDDEVKALNDVKPGQSANPNSAEELRKLKHRFEGWKKQYKIRLRETKTKVSKLGNSEMEKSKRSWWGKLSSKT* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01810 1198 Coils Coil 991 1039 - -
Rops3g01810 1198 Gene3D Myosin VI head, motor domain, U50 subdomain 437 545 - -
Rops3g01810 1198 SMART MYSc_2a 190 869 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 MobiDBLite consensus disorder prediction 1175 1198 - -
Rops3g01810 1198 FunFam Unconventional myosin-XIX 568 758 - -
Rops3g01810 1198 SMART iq_5 929 951 IPR000048 GO:0005515
Rops3g01810 1198 SMART iq_5 892 914 IPR000048 GO:0005515
Rops3g01810 1198 SMART iq_5 869 891 IPR000048 GO:0005515
Rops3g01810 1198 ProSiteProfiles IQ motif profile. 930 958 IPR000048 GO:0005515
Rops3g01810 1198 CDD MYSc_Myo8 210 856 IPR036022 -
Rops3g01810 1198 ProSiteProfiles IQ motif profile. 893 922 IPR000048 GO:0005515
Rops3g01810 1198 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 143 192 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 Pfam Myosin head (motor domain) 198 856 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 Coils Coil 1116 1136 - -
Rops3g01810 1198 ProSiteProfiles Myosin motor domain profile. 196 868 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 953 IPR027417 -
Rops3g01810 1198 MobiDBLite consensus disorder prediction 1175 1191 - -
Rops3g01810 1198 MobiDBLite consensus disorder prediction 1076 1103 - -
Rops3g01810 1198 PRINTS Myosin heavy chain signature 609 637 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 PRINTS Myosin heavy chain signature 280 305 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 PRINTS Myosin heavy chain signature 556 584 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 PRINTS Myosin heavy chain signature 323 350 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 PRINTS Myosin heavy chain signature 226 245 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops3g01810 1198 MobiDBLite consensus disorder prediction 1 17 - -
Rops3g01810 1198 MobiDBLite consensus disorder prediction 79 109 - -
Rops3g01810 1198 Coils Coil 12 32 - -
Rops3g01810 1198 FunFam Myosin heavy chain 380 436 - -
Rops3g01810 1198 Gene3D - 802 869 - -
Rops3g01810 1198 Gene3D - 874 920 - -
Rops3g01810 1198 Gene3D - 568 758 - -
Rops3g01810 1198 PANTHER MYOSIN 189 1186 - -
Rops3g01810 1198 MobiDBLite consensus disorder prediction 18 36 - -
Rops3g01810 1198 Gene3D Kinesin motor domain 195 801 IPR036961 -
Rops3g01810 1198 MobiDBLite consensus disorder prediction 1 119 - -
Rops3g01810 1198 Gene3D - 380 436 - -
Rops3g01810 1198 ProSiteProfiles IQ motif profile. 872 899 IPR000048 GO:0005515
Rops3g01810 1198 Pfam IQ calmodulin-binding motif 932 948 IPR000048 GO:0005515
Rops3g01810 1198 Pfam IQ calmodulin-binding motif 874 890 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01810 Rops-Chr3 31065346 31076829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01810 1 1193 Myosins gene family AT5G54280 60.275 0.0 1456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01810 K10357 - gmx:100802074 1736.85