Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01807 ATGAGGGGTTTGGGGGTGGATCTTGAGACAGGATGTTTGCTTTATGGACCTCCAGGTTGTGGTAAAGCACTGATTGCCAAAGCTGTTACCAATGAGGCAGGAGCTAATTTTATTCATATAAAGGAACCTGAACTTTTAAAGAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACATTGTTTAGTCGAGCAAAGGACATGTGCACCTTGTGGGAGAGGTTTCTGCCTCGGGTGGTGCTGAGGGTTTTGCTGGTCGAAGCTGATGATTCTACTCGCCAGATCTTTGTTGCTCTTCTCCGTGAATGCAGTTACAGAGTTGCTGCAGTTCGTGATGGCTTAAAGGCATGGGGGACATTGAAGAACAAAGCACCCGAGTTAGATCTCCTATTAACAGAAGGGGAGTTGCCATCAATATCTGGATTTTCACTTCTTACTTCAATCATGGAGCACGACATTTGCAAAAACATTCCTGTCATAAGGATGTCTTCACGTGATTCAGTTAGCATGGAATTCAAATGCATGTTAGAAGGTGCAACTTCCTTTCTTTTCACTGAATATCAATGTAGGACAACCTTGGAAGCAAGAAGGGGAGTTGGAAAGGCTTTTATTACTGCATTCAGGTCTGGTGCAGTGAGGGGTTTCCTCCATGCATCGAATGGTCTTTTGGTGCTCTACATTGTCGCCAATCTCTTCGAGCTTTATCATGGCTCTCCCGAGAAGGTCTAG 726 0.4463 MRGLGVDLETGCLLYGPPGCGKALIAKAVTNEAGANFIHIKEPELLKKYVGESELAVRTLFSRAKDMCTLWERFLPRVVLRVLLVEADDSTRQIFVALLRECSYRVAAVRDGLKAWGTLKNKAPELDLLLTEGELPSISGFSLLTSIMEHDICKNIPVIRMSSRDSVSMEFKCMLEGATSFLFTEYQCRTTLEARRGVGKAFITAFRSGAVRGFLHASNGLLVLYIVANLFELYHGSPEKV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01807 241 Gene3D - 9 67 IPR027417 -
Rops3g01807 241 Pfam Response regulator receiver domain 82 183 IPR001789 GO:0000160
Rops3g01807 241 SMART REC_2 80 196 IPR001789 GO:0000160
Rops3g01807 241 Gene3D - 80 198 - -
Rops3g01807 241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 64 IPR027417 -
Rops3g01807 241 ProSiteProfiles Response regulatory domain profile. 81 199 IPR001789 GO:0000160
Rops3g01807 241 Pfam ATPase family associated with various cellular activities (AAA) 13 67 IPR003959 GO:0005524|GO:0016887
Rops3g01807 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR 80 182 IPR045279 GO:0009736
Rops3g01807 241 SUPERFAMILY CheY-like 80 183 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01807 Rops-Chr3 31000771 31001624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01807 71 182 Response Regulator Gene Family AT5G24470 72.321 2.99e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops3g01807 Response_reg 5.4e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01807 K12130 - gmx:100809490 165.622