Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01806 ATGGCCACCACCACCACCACCATAGAGCGAGAAATCTCACGTGCTTCTCACATGCACGACTGCATCACCACAGACGACGAAGACGACGTCGTCGAGGACAGCGAGCCATACAGAGACAACAACGAAGAAGAACACAGACGAGAGGAGAAAAACGACATCGTTTCGCGGCGGTTAAAGGGTCGGGTCGTGGACCCGAGATCGAAATGTGTTCAAGAATGGAACAGGGTGTTTCTGCTAGTGTGCGCAGCGGGGTTATTCGTGGACCCGTTATTCTTCTACGCGCTCTCCGTTAGTGAATCGGGTATGTGTCTCTTCATCGATGGTTGGTTCGCCGTTACCGTAACGGTGCTCCGTTGCATGACCGATGCTTTGCACGTGTGGAACATGTTCCTTCGCTTCAGGATGGCGAAGCGGTCCTCCTTTGGGTTCGGAGGCACTGCGGTTGCTGATGCCGCTGGTTCGGTCGCTATTCGGTATCTTAAGTCCCGGACGGGATTCTTCTTTGACTTGTTTGTCATTCTTCCTATACCTCAGATTATGCTTTGGGTGGCAATACCCTCTTTGTTGGGAAAAGGTTCAATTACCTTGGTGATGACAGTGTTGCTAATCATGTTTCTCTTCCAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTAAGACGCACACAAAACCTCTCTGGCTTCATTTTTGGAACCGTTTGGTGGGGTATTGCTCTTAATATGATCGCTTATTTTGTCGCTTCCCATGCAGCAGGGGCTTGTTGGTACTTGTTGGGGATCCAAAGGGCAGCCAAGTGTCTCAAAGAGCAGTGTGAAAAAACAACTGGTTGTGGCATTAAAATGGTGTCTTGTCATAAACCTATGTATTATGGAAGCACTAGCTTATTGACTGGGGATAGAGCAAGATTGGCATGGGCAGGGAATAGGGAAGCAAGGTCTACATGCTTAATTGGCCCTGATAGCTTCAATTATGGTGCTTATAAATGGACTGTTCAACTTGTCACTAATGAGAATAGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAATCTAGAGAGCACGACGGAGTGGTTGGAAGTAGTTTTCAACATCATTGTGTTAACCAGTGGCCTCCTTCTTGTCACTATGTTGATTGGAAACATTAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGCCATGCAATTGAAGATGAGGAATATTGAATGGTGGATGAGGAAAAGGCGTTTGCCACAAGAGTTTAGGCAACGAGTGCGTAACTATGAAAGACAACGTTGGGCTGCTATGCGTGGGGTTGATGAATGTGAGATGACCAGAAATCTCCCTGAGGGTTTAAGAAGAGACATCAAATACCATCTTTGTTTAGATTTGGTGAGACAGGTGCCACTATTTCAACATATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTCATATTCACAAAGGGAGAAATTATATCCAAAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTGGTGAGGGGTCACCTTCAAAGCAGCCAAGTCCTAAGAGATGGGGTGAAAAGTTATTGCATGTTAGGACCTGGAAACTTCAGTGGTGATGAACTCCTTTCATGGTGTTTGAGGAGACCCTTCATAGAACGCCTACCACTATCTTCATCCACACTCATCACACTGGAAACCACAGAGGCATTTGGTCTTGAAGCAGAGGATGTGAAGTATGTGACCCAACATTTTAGGTACACTTTTGTGAAGGAAAAGGTGAGGAGAAGTGCTAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTAGCATGGAGAAGGTACAAGCATAGGTTGACTTTGACCTCATTGTCCTTTATTAGGCCTAGGAGGCCTTTGTCAAGATGCTCTTCCTTGGGAGAAGATAGGCTTCGTCTCTACACTGCTTTGTTAACCTCACCAAAGCCTAATCAAGAAGATTTTGACTTTTGA 2016 0.4568 MATTTTTIEREISRASHMHDCITTDDEDDVVEDSEPYRDNNEEEHRREEKNDIVSRRLKGRVVDPRSKCVQEWNRVFLLVCAAGLFVDPLFFYALSVSESGMCLFIDGWFAVTVTVLRCMTDALHVWNMFLRFRMAKRSSFGFGGTAVADAAGSVAIRYLKSRTGFFFDLFVILPIPQIMLWVAIPSLLGKGSITLVMTVLLIMFLFQYLPKIYHSVCHLRRTQNLSGFIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCEKTTGCGIKMVSCHKPMYYGSTSLLTGDRARLAWAGNREARSTCLIGPDSFNYGAYKWTVQLVTNENRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQEFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEIISKEGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPLSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVRRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQEDFDF* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01806 671 Pfam Ion transport protein 73 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops3g01806 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 631 - -
Rops3g01806 671 FunFam cyclic nucleotide-gated ion channel 4 472 590 - -
Rops3g01806 671 SUPERFAMILY cAMP-binding domain-like 400 589 IPR018490 -
Rops3g01806 671 FunFam Cyclic nucleotide-gated ion channel 1 401 465 - -
Rops3g01806 671 MobiDBLite consensus disorder prediction 17 49 - -
Rops3g01806 671 Gene3D Jelly Rolls 472 590 IPR014710 -
Rops3g01806 671 ProSiteProfiles cAMP/cGMP binding motif profile. 474 553 IPR000595 -
Rops3g01806 671 Gene3D Helix hairpin bin 399 465 - -
Rops3g01806 671 CDD CAP_ED 474 580 IPR000595 -
Rops3g01806 671 SUPERFAMILY Voltage-gated potassium channels 65 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01806 Rops-Chr3 30928763 30938695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01806 46 670 Ion Channels AT5G54250 77.567 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01806 K05391 - gmx:100796761 1097.8