Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01780 ATGCATCCATGCACTCCCACGACTCCTAATGTCCAGCCTCACTTACGAAGTGCAGCGTCGCATGCAGTGGCAGAAACCCTCTTGGAACAAGGCTTTCATTTCCTCAGATCGAAACTCCGAAACATGCAAAGCACCGTTTCAAGCGTGAGTGGAAAACAAAGCGAGAGAGAGACCAACAGTGAAGAACATGACGTGGACAGAGACTGTTCCCAAGGGATCAGTGGTGAAGAAGACGGTGAAACTTCTAGAAAAAAACTTAGACCTACCAAAGACCAGTCAACTATTCTTGAAGAGAGTTTCAAAGAGCACAATACCCTCAACCCAAAACAAAAGTTGGCACTGGCAAAACAGCTAGGTCTTCGACCAAGACAAGCAGAAGTCTGGTTCCATAACAGAAGGGCAAGAACCAAGCTAAAACAAACTGAGGTGGACTGTGAGGTGTTGAAAAGATGCTGTGAAAATCTAACGGAGGAAAACAGTAGGCTGCAAAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAGATTTTACATGCAAATGACCCCACCAGCAACCCTCATTATATGCCCATCTTGTGA 585 0.4564 MHPCTPTTPNVQPHLRSAASHAVAETLLEQGFHFLRSKLRNMQSTVSSVSGKQSERETNSEEHDVDRDCSQGISGEEDGETSRKKLRPTKDQSTILEESFKEHNTLNPKQKLALAKQLGLRPRQAEVWFHNRRARTKLKQTEVDCEVLKRCCENLTEENSRLQKEVQELRALKLSPQILHANDPTSNPHYMPIL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01780 194 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Rops3g01780 194 Pfam Homeobox associated leucine zipper 139 173 IPR003106 GO:0006355|GO:0043565
Rops3g01780 194 Coils Coil 138 172 - -
Rops3g01780 194 Pfam Homeodomain 83 137 IPR001356 GO:0003677
Rops3g01780 194 MobiDBLite consensus disorder prediction 45 91 - -
Rops3g01780 194 MobiDBLite consensus disorder prediction 55 91 - -
Rops3g01780 194 CDD homeodomain 83 140 IPR001356 GO:0003677
Rops3g01780 194 SMART halz 139 182 IPR003106 GO:0006355|GO:0043565
Rops3g01780 194 Gene3D - 89 137 - -
Rops3g01780 194 SUPERFAMILY Homeodomain-like 68 140 IPR009057 -
Rops3g01780 194 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 40 182 - -
Rops3g01780 194 SMART HOX_1 81 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01780 Rops-Chr3 30293651 30294319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01780 51 186 Homeobox Transcription Factor Family AT4G16780 72.993 2.40e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops3g01780 Homeodomain 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01780 K09338 - gmx:100787231 225.328