Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01778 ATGAATAATGTTAGAATATTACCAATCTGCTCTCTTTTATTTTTCTTCATGAGAATCACCACTTCACTAGACAGAATTGTTCCAGGTCAATCCATCCTATATAATGAGACAATTGTTTCAGCCTCCGCAACTTTTGAACTGGGGTTTTTCAGACCTGGATCTAATAGTCTATATGTTGGAATATGGTATAAGGATTCTCCTTCCACAGTAGTATGGGTGGCCAACAGAGAAGCACCACTCAAAAATAACTCTGGAGTTTTACAAATCAATGATCAAGGAGTTCTTGTCCTTCTTAATGGCACAAAGAGCATTGTCTGGTCGTCCAATATATCAGGCAAAGCAGAGAATCCTATTGCACAGTTGTTGGACTCAGGAAATCTTGTTGTGAGAAATGGACATGACAATAACCTGAGCAATCTATTATGGCAAAGTTTTGATTATCCATGTGATACATTATTGCCAGGAATGAAGCTTGGATGGAACTTAGAAACTGGTCTAGACAGGTTTGTGTCATCATGGAAAAGTGAAGATGATCCTGGTCAAGGTGACAACATAATTAAAATAGACCTTCGAGGCTATCCACAAATAGTTCAACTGAAAGGAAATGTTATAAAGGTTAGAGCAGGACACTGGAATGGCCTTACTATTACAGGATATAAACCTCAAAAGCCTAATACAGTATATAAAGAAGAATTTGTGTTCAATGAGAAAGAAGTATATTATCAGTATGAACTTCTAAATAGATCAGTTTTCTACAGATATGTCGCCTCCACTTCAGGCATTGGGCAGAGTTTAGTCTGGACAAGTCAAACAAGTAGTTGGGATGTAATCTCAATTTACCTGGCAGATCAGTGTGCAAATTATGGTTTTTGTGGGGCATATTCAATATGCAATGTTAGTAACAACGCTCCCGTCTGTGTATGCCTGAAAGGATTTGTACCGAAATATCCGAAAGAATGGAATATGTCATATTGGTCTAGTGGCTGCATTCGGCGCTTTCCATTGGATTGCAATAATAGTGATGGCTTCATGAATTACAGGGATTTGAAATTACCAGATACGTCATCTTCATGGTATAGCAAGACCATGGACCTTATGGAATGCAGGAAATCTTGTCTGCAAAACTGCTCCTGTACAGCATATGCAAATTTGGATGCACGAGGTGGAGGAAGTGGCTGCTTGCATTGGTTTGATGATCTGATTGACATGAGTCAATTCTCTCAAGCTGGACAAGACCTTTATATACGAGTTCCTGCTTCAGAGCTAGGTTCAAACATAACAAATGAAACAGACACAAGGGATGCATTTGGTGAGCATGAAAACAAGCAGAGTCATCTTCTTATTATTGTTGTACCGATCTCATTTATAACATTGCTTATAGTGCTGGGCCTATTCGTTTACTGGATTAGAAGGCAGAGGAGGAAAGGGGAAGATTTGCTACATTTTGAAGTAGGCAAGAGCATGAAAGTTAAAGACTCAAAGTTTACTGAAACAGATAAGGGTGCAAAAGTTAAGAAGAAGGATGTCAAATTGCCATTATTCAGTTTTGCGAGCGTTTCTGCAGCAACTAATAACTTTTCAGATGCAAATAAACTCGGCGAGGGTGGCTTTGGACCTGTTTACAAGGGTAAATTATTGAATGGGGACGAGGTTGCTATAAAAAGGCTATCTCGAAGATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACACAATAATCTTGTTAGACTTCTGGGTTGCTGCATTGATGGAAATGAAAAGATGCTGATTTATGAATTTATGCCTAATAAAAGCTTGGATTGTTTTCTTTTTGATATAACAAAAAGAAGGATGCTAGATTGGGGAACACGAGTTCAGATAATTGATGGGATTTCCCAAGCACTCCTTTATCTTCATCAATATTCCAGGTTCCGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTATTAGACATCAACATGAATCCTAAAGTATCAGATTTTGGAATGGCAAGAATATTTGGCGACAATGAACTTCAAGCAAATACAAATCGGATAGTTGGAACTTATGGCTACATGTCCCCTGAATATGTTCTGAATGGCCTATACTCAATAAAATCTGATGTGTTTAGTTTTGGGGTCCTTTTGTTAGAGATTGTGAGTGGCAAGAAGAATACAGATTTTTATCAAACAAATTTCCTCCATCTTCTTGGATATGCTTGGGATCTATGGACAAGCAATTTGGTAATGGACCTGATGGATCCAGCACTGGAAGATATCTCCAATAAGCACGTGGTACCAAGGTATGTGAACATAGGACTTCTCTGTGTTCAAGAAAGTCCAGCAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGCAATGACACTGCAACCCTTCCTCCTCCTAAGGCACCTGCATTTCTAATTGTGAGAGGTAAAGAAAATTCAAGACCGGCCAGAAGAATGGAAGAAAACTTTTCTGTTAATGTTCTTACAGATTCACTGGTGGAAGCAAGATGA 2532 0.3874 MNNVRILPICSLLFFFMRITTSLDRIVPGQSILYNETIVSASATFELGFFRPGSNSLYVGIWYKDSPSTVVWVANREAPLKNNSGVLQINDQGVLVLLNGTKSIVWSSNISGKAENPIAQLLDSGNLVVRNGHDNNLSNLLWQSFDYPCDTLLPGMKLGWNLETGLDRFVSSWKSEDDPGQGDNIIKIDLRGYPQIVQLKGNVIKVRAGHWNGLTITGYKPQKPNTVYKEEFVFNEKEVYYQYELLNRSVFYRYVASTSGIGQSLVWTSQTSSWDVISIYLADQCANYGFCGAYSICNVSNNAPVCVCLKGFVPKYPKEWNMSYWSSGCIRRFPLDCNNSDGFMNYRDLKLPDTSSSWYSKTMDLMECRKSCLQNCSCTAYANLDARGGGSGCLHWFDDLIDMSQFSQAGQDLYIRVPASELGSNITNETDTRDAFGEHENKQSHLLIIVVPISFITLLIVLGLFVYWIRRQRRKGEDLLHFEVGKSMKVKDSKFTETDKGAKVKKKDVKLPLFSFASVSAATNNFSDANKLGEGGFGPVYKGKLLNGDEVAIKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDGNEKMLIYEFMPNKSLDCFLFDITKRRMLDWGTRVQIIDGISQALLYLHQYSRFRIIHRDLKASNILLDINMNPKVSDFGMARIFGDNELQANTNRIVGTYGYMSPEYVLNGLYSIKSDVFSFGVLLLEIVSGKKNTDFYQTNFLHLLGYAWDLWTSNLVMDLMDPALEDISNKHVVPRYVNIGLLCVQESPADRPTMSDVVSMIGNDTATLPPPKAPAFLIVRGKENSRPARRMEENFSVNVLTDSLVEAR* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01778 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Rops3g01778 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 787 - -
Rops3g01778 843 FunFam Uncharacterized protein 502 601 - -
Rops3g01778 843 SMART blect_4 29 148 IPR001480 -
Rops3g01778 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 179 IPR036426 -
Rops3g01778 843 Gene3D Transferase(Phosphotransferase) domain 1 602 802 - -
Rops3g01778 843 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Rops3g01778 843 Gene3D - 18 145 IPR036426 -
Rops3g01778 843 SUPERFAMILY Protein kinase-like (PK-like) 510 815 IPR011009 -
Rops3g01778 843 Gene3D Hepatocyte Growth Factor 334 415 - -
Rops3g01778 843 ProSiteProfiles Bulb-type lectin domain profile. 23 142 IPR001480 -
Rops3g01778 843 SMART serkin_6 526 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01778 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 145 - -
Rops3g01778 843 CDD STKc_IRAK 532 796 - -
Rops3g01778 843 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Rops3g01778 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 804 - -
Rops3g01778 843 Pfam Protein tyrosine and serine/threonine kinase 530 795 IPR001245 GO:0004672|GO:0006468
Rops3g01778 843 SMART ntp_6 338 417 IPR003609 -
Rops3g01778 843 CDD B_lectin 35 148 IPR001480 -
Rops3g01778 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 336 417 - -
Rops3g01778 843 ProSiteProfiles Protein kinase domain profile. 526 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01778 843 Pfam Domain of unknown function (DUF3403) 798 843 IPR021820 GO:0004674
Rops3g01778 843 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Rops3g01778 843 CDD PAN_AP_plant 333 418 - -
Rops3g01778 843 Pfam D-mannose binding lectin 69 174 IPR001480 -
Rops3g01778 843 PIRSF SRK 1 843 IPR024171 GO:0004674
Rops3g01778 843 Pfam PAN-like domain 337 403 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01778 Rops-Chr3 30267063 30271144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01778 503 816 Receptor kinase-like Gene Family AT4G23250 57.812 2.53e-122 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01778 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01778 - - cave:132173741 909.057