Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01776 ATGCTAGGTGTTTCTTTACAGTCAGAAAGCAAGGGTACACTGAAGGATGGGCAAGAGTTAGCTGTGAAAAGGCTTTCAAAGAAGTCAGGACAAGGATTAGAGGAGTTCAAAAATGAAGTGGCGTTGATTGCCAAACTTCAGCACCGTAATCTTGTCAAGCTTATAGGTTGCTGCATTGAAGGAGTAGAAAGAATGTTGATATATGAATACATGCCCAACAAAAGCTTGGACAATTTTATTTTTGATGAAACTAGAAGGAAGTCGGTAGATTGGCATAAGCGTTTCAACATTATCAGTGGCATTGCTCAAGGACTTCTTTATCTTCACCAAGACTCTAGATTGAGATTTGTTCATAGGGATTTGAAGACCAGCAATATTCTACTAGATGCAAATTTGGATCCTAAAATATCAGACTTTGACCTAGCTTGA 429 0.3846 MLGVSLQSESKGTLKDGQELAVKRLSKKSGQGLEEFKNEVALIAKLQHRNLVKLIGCCIEGVERMLIYEYMPNKSLDNFIFDETRRKSVDWHKRFNIISGIAQGLLYLHQDSRLRFVHRDLKTSNILLDANLDPKISDFDLA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01776 142 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 142 - -
Rops3g01776 142 SUPERFAMILY Protein kinase-like (PK-like) 11 142 IPR011009 -
Rops3g01776 142 Gene3D Phosphorylase Kinase; domain 1 2 70 - -
Rops3g01776 142 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Rops3g01776 142 FunFam Os07g0541700 protein 71 142 - -
Rops3g01776 142 Gene3D Transferase(Phosphotransferase) domain 1 71 142 - -
Rops3g01776 142 Pfam Protein tyrosine and serine/threonine kinase 15 142 IPR001245 GO:0004672|GO:0006468
Rops3g01776 142 SMART tyrkin_6 4 142 IPR020635 GO:0004713|GO:0006468
Rops3g01776 142 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01776 142 FunFam Uncharacterized protein 5 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01776 Rops-Chr3 30256406 30257737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01776 11 142 Receptor kinase-like Gene Family AT4G11530 63.636 2.26e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01776 PK_Tyr_Ser-Thr 4.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01776 - - gmx:100786515 234.958