Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01766 ATGAAGGAAATACTTGAAAGGCATCACTTGCATTCAAAGAACCTGGCAAAACTGGAACAACCGTCTCTCGAGTTGCAGCTGGTTGAAAACAGCAACCGCTCCAGATTGAGTAACGAAGTTGCTGAGAAGAGCCATCTACTAAGGCAGCTGAGAGGAGAGGATCTTCATGGTTTAAATATTGAAGAATTACAACAACCCAACATGCATGAGAGGCGAGTTGGTCCAACCTCGTGGGTGCCTAACCACCACTTGGCTCTTGCTACTGGAGAAGTCCTTACTCAACCCGATAAATATCAACGCTTAGTTGGTCGTCTTATCTACCTATGTTTCACAAGACCAAAGCTTTCGTACTATGTTCACATTCTATCTCAATTTATGCAGCAATCAAAGCAAGAGCATTGGGAGGCTACTTTCCATGTAGTGCGCTATTTGAAAAATAATTCTGGGCAAGGCATTTTATTGCGTCAAGATAGTCCTTTGCAACTATATGGATGGTGTGATTCAGATGGAGCTAGTTGTCTGTTGACTCGACGATCACTCACAGGGTGGTTTATTCTTCTTGGTCACTCACCCATCTCTTGGAAAACCAAGAAGCAACACACTGTTTCTCGATCTTCCGTCCAAGCTGAGTACCGGTCTATCTACCACTTGTCAGCTAAAATGGCTCAAAGGTCTTCTCTCTAG 684 0.4386 MKEILERHHLHSKNLAKLEQPSLELQLVENSNRSRLSNEVAEKSHLLRQLRGEDLHGLNIEELQQPNMHERRVGPTSWVPNHHLALATGEVLTQPDKYQRLVGRLIYLCFTRPKLSYYVHILSQFMQQSKQEHWEATFHVVRYLKNNSGQGILLRQDSPLQLYGWCDSDGASCLLTRRSLTGWFILLGHSPISWKTKKQHTVSRSSVQAEYRSIYHLSAKMAQRSSL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01766 227 SUPERFAMILY DNA/RNA polymerases 90 212 IPR043502 -
Rops3g01766 227 PANTHER GAG-POL-RELATED RETROTRANSPOSON 73 221 - -
Rops3g01766 227 CDD RNase_HI_RT_Ty1 163 216 - -
Rops3g01766 227 Coils Coil 33 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01766 Rops-Chr3 30057479 30061176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01766 1 65 MADS-box Gene Family AT2G22540 73.846 7.76e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01766 - - var:108326303 211.075