Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01756 ATGGAGAACCTGCCAGACAAGCCAATTCAGCTTCTCGCATTGCTTCTGTCCACTCAATTTCTGGGCCTGGAACTTCTACTAGTCTATAAGTTGGAACATGGTACAAGAATTCTCCTTCAACACTGGTATGGGTGGCCAACAGAGAAACACCACTCAAAAGTACCTCTGGAGTTTTCCAGAACAATGATGAAGGAGTTCTTGTCCATCTTAATGGCACAAAGAGCATTGTCTGGCCCTCCGATATATCAGGAAAAACAGAGAATCCAATTGCACAACTCTTGGACTCGGGAGATCTTGACCATTACCCATTATCACAACCTTCTCATTCCTTCAAAACCATCACACCCCAACAGAGAAAAGAGAGACCCTCAGAGACACCACCAAGTCCATGGTGGCCTAGAAGCCACAAAGAACATCACAAAGAAGCACTATAGAGAGGTGAGGCGTCGTCCTTGGGGAAAATATGCAGCGGGGATTCGTGACTCAGCACGTCATGGAGCAAGGATATGGCTTGGCACGTTCCAAACAGCTGAAGAAGCTGCCATGGCTTATGATAAAGCTGCTTTCAAGATGAGGGGTGCTAAGGCTTTGCTCAATTTCCCAGCTGAAGTTGTTGCTACAGCTTCTATTCAGATGGATTTGTCTTCTAAGAATGATTTGAATAATCATGATTCTGATTCAAGTGCTAGTAGTTCTTGCACCAATTCCACTTCAACTGGGGTTAATAGGTCTCAGTTTGAAAGCACAAGTAGCACAGGTGACTAG 765 0.4497 MENLPDKPIQLLALLLSTQFLGLELLLVYKLEHGTRILLQHWYGWPTEKHHSKVPLEFSRTMMKEFLSILMAQRALSGPPIYQEKQRIQLHNSWTREILTITHYHNLLIPSKPSHPNREKRDPQRHHQVHGGLEATKNITKKHYREVRRRPWGKYAAGIRDSARHGARIWLGTFQTAEEAAMAYDKAAFKMRGAKALLNFPAEVVATASIQMDLSSKNDLNNHDSDSSASSSCTNSTSTGVNRSQFESTSSTGD* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01756 254 SUPERFAMILY DNA-binding domain 143 203 IPR016177 GO:0003677
Rops3g01756 254 MobiDBLite consensus disorder prediction 110 144 - -
Rops3g01756 254 FunFam Ethylene-responsive transcription factor 2 142 203 - -
Rops3g01756 254 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Rops3g01756 254 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Rops3g01756 254 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Rops3g01756 254 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
Rops3g01756 254 MobiDBLite consensus disorder prediction 114 141 - -
Rops3g01756 254 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Rops3g01756 254 MobiDBLite consensus disorder prediction 217 254 - -
Rops3g01756 254 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Rops3g01756 254 PANTHER DNA-BINDING DOMAIN 124 233 IPR044808 GO:0003700|GO:0009873
Rops3g01756 254 CDD AP2 142 202 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01756 Rops-Chr3 29724958 29733971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01756 139 217 AP2-EREBP Transcription Factor Family AT5G47220 60.759 2.20e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g01756 AP2 1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01756 K13433 - gmx:100811533 152.525