Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01748 ATGAATAATGTTAGAATGTTACCAATCTGTTCTCTTTTATTTATCTTCATGAGAACCACCACTTCACTAGACAGTATTGTTCCAGGTCAATCCATCCAATATAATGAGAAATTAGTTTCAGCCTCTAGTGTTTTTGAACTTGGGTTTTTCAGACCTGGGACTTCTAATAGTCTATATGTTGGAATATGGTACAAGGATTCTCCTTCAATAGTGGTATGGGTGGCCAACAGAGAAGCACCACTCAACAACACCTCTGGAGTTTTACAAATCAATGATCAAGGAGCTCTTGTCCTTCTTAGTGACACAGAGAGCATTGCCTGGTCATCCAATATCTCAGGCAAAGCAGAGAACCCAACTGCACAGCTCTTGGACTCCGGGAATTTTGTTGTTAGAAATGGACATGACAACAATCAGGGCCATCTATTGTGGCAGAGTTTTGATTATCCATGTGATACATTATTGCCAGGAATGAAGCTTGGATGGAACTTAGAAACTGATCTAGACAGGTTTCTGTCATCTTGGAAAAGTGCAAATGATCCTGGTCAGGGTGACAACATATTTAAAATAGACATTCGAGGCTACCCACAAGCAGTTTTCCTGAAAGGAAATGTTATAAATGCTAGAGCAGGACTTTGGAATGGCTTTAATTTTACAGGACTTTGGAAAAGCTTTAATGGTTTTTATAATTTAATATTTAGTGCAGAATTTGTGTTCAATGAGAAAGAAGTATATTATAAGTATGAGCTTCTGAATAGATCGGTTTTCTCAAGGATTGTTCTCCCCACTTCAGGCAATGCGCAGACTTTAGTCTGGACAAGTCAAACAAGCAGCTGGGATGTAATCGCAATAAACCTAGATCAGTGCGTATATTATGCTTTGTGTGGTGCATATTCAATTTGCAATGTTAGTAACGATGCTTCTGTCTGTGCATGCCTGAAAGGATTTGTACCCAAACATCCAGAAGAATGGAATATGTCACATTGGTCTAACGGCTGCATCCGCAGGACTCCATTGGATTGTAATAACAATGATGGCTTCATGAAGTACATGGGTTTGAAGTTACCAGACACTTCTTCTTCATGGTATAACAAGACCATGGACCTTATGGAATGCCAGAAATCTTGTTTGCATAACTGTTCCTGTTCAGCATATGCAAATTTTGATGTGCGAGGTGGAGGAAGTGGCTGCGTACTTTGGTTTGATCATCTGATTGACATGAGTCAATACTCTCAAAGGGGACGGAGCATTCCTGGGGGACAGGACCTTTATTTACGAGTTCCTGCTTCAGAGCTAGGTACAAACATAACGAATGAAACAGAACCCGGGAAAGCATTTGGTGGGCATGAAAACAAGCAGAGGGATCTACTTCTAATTGTTCTACCGATCTCATTATTAACATTGCTTATCTTGATGGGCCTATTCGTTTACTGGATTAGAAATCAAAGGGGGAAAGGGGAAGATTTGTTACTTTTTGAAGTAGGCATGAGTATGAAAGTTAAAGACTCGGAGTTTACTAGAGCAGAAAAGGGTGCAAAGGTTAAGAAGAAGGAAGTCAAATTGCCATTATTCAGTTTTGCAAGTGTTTCGGCAGCAACTAATAAATTTTCAGATGCAAATAAACTTGGTGAAGGTGGCTTTGGACCTGTTTACAAGGGTAAATTATTGAATGGGGATGAGGTTGCCGTAAAGAGGCTATCCCGAAGATCTAGTCAAGGATGGGTGGAGTTGAGAAATGAAGCTTTGTTGATTGCAAAACTCCAACACAATAATCTTGTTCGACTTCTTGGTTGTTGCATTGATCGAAATGAAAAGATGCTGATATATGAATTTATGCCTAATAAAAGCTTGGATTGCTTTCTTTTTGATACAACAAAAAGAAGGATGCTAGATTGGGGAACGCGAGTTCGGATAATTGATGGGATTGCCCAAGGACTCCTTTATCTTCATCAATATTCCAGGTTTCGGATCATTCATCGAGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTAGAGAGAATGAACTTCAAGGAAATACAAATCGGATAGTTGGAACTTATGGCTACATGTCCCCTGAATATGCCATGAAAGGCCTTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTCCTTCTGTTAGAGATTATAAGTGGCAAGAAGAATACAGGTTTTTATCAAACAAAGTCCCTCCGTCTTCTTGGATACGCTTGGGATCTATGGACAAGCAGTTCGGGAGTAGACCTGATGGATCCAGCACTGGAAGATATTTCCAATAAGCATGTAGTGCCGAGATATGTGAACATAGGACTTCTCTGTGTTCAAGAAAGTCCAGCAGATAGACCAACCATGTCTGATGTGGTATCAATGATTTGCAATGACACTGCAGCCCTTCCTTGTCCGAAGCCACCTGCATTTCTAAATGTGAGAGATAATGAAAATTCAAGATTTTCCAGAAACATGGAAGAAAAATTTTCTGTGAATCTTATCACAGATTCATTTGTGGAAGCAAGATGA 2559 0.3943 MNNVRMLPICSLLFIFMRTTTSLDSIVPGQSIQYNEKLVSASSVFELGFFRPGTSNSLYVGIWYKDSPSIVVWVANREAPLNNTSGVLQINDQGALVLLSDTESIAWSSNISGKAENPTAQLLDSGNFVVRNGHDNNQGHLLWQSFDYPCDTLLPGMKLGWNLETDLDRFLSSWKSANDPGQGDNIFKIDIRGYPQAVFLKGNVINARAGLWNGFNFTGLWKSFNGFYNLIFSAEFVFNEKEVYYKYELLNRSVFSRIVLPTSGNAQTLVWTSQTSSWDVIAINLDQCVYYALCGAYSICNVSNDASVCACLKGFVPKHPEEWNMSHWSNGCIRRTPLDCNNNDGFMKYMGLKLPDTSSSWYNKTMDLMECQKSCLHNCSCSAYANFDVRGGGSGCVLWFDHLIDMSQYSQRGRSIPGGQDLYLRVPASELGTNITNETEPGKAFGGHENKQRDLLLIVLPISLLTLLILMGLFVYWIRNQRGKGEDLLLFEVGMSMKVKDSEFTRAEKGAKVKKKEVKLPLFSFASVSAATNKFSDANKLGEGGFGPVYKGKLLNGDEVAVKRLSRRSSQGWVELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDCFLFDTTKRRMLDWGTRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFRENELQGNTNRIVGTYGYMSPEYAMKGLFSIKSDVFSFGVLLLEIISGKKNTGFYQTKSLRLLGYAWDLWTSSSGVDLMDPALEDISNKHVVPRYVNIGLLCVQESPADRPTMSDVVSMICNDTAALPCPKPPAFLNVRDNENSRFSRNMEEKFSVNLITDSFVEAR* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01748 852 SMART ntp_6 341 426 IPR003609 -
Rops3g01748 852 Pfam Protein tyrosine and serine/threonine kinase 539 804 IPR001245 GO:0004672|GO:0006468
Rops3g01748 852 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Rops3g01748 852 Pfam Domain of unknown function (DUF3403) 807 852 IPR021820 GO:0004674
Rops3g01748 852 CDD PAN_AP_plant 336 427 - -
Rops3g01748 852 CDD B_lectin 35 149 IPR001480 -
Rops3g01748 852 Gene3D - 18 146 IPR036426 -
Rops3g01748 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Rops3g01748 852 ProSiteProfiles EGF-like domain profile. 284 321 IPR000742 -
Rops3g01748 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 426 - -
Rops3g01748 852 SMART blect_4 29 149 IPR001480 -
Rops3g01748 852 Pfam PAN-like domain 340 406 IPR003609 -
Rops3g01748 852 ProSiteProfiles PAN/Apple domain profile. 340 427 IPR003609 -
Rops3g01748 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 611 813 - -
Rops3g01748 852 SMART serkin_6 535 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01748 852 Gene3D Hepatocyte Growth Factor 337 416 - -
Rops3g01748 852 Gene3D Transferase(Phosphotransferase) domain 1 611 811 - -
Rops3g01748 852 PIRSF SRK 1 852 IPR024171 GO:0004674
Rops3g01748 852 CDD STKc_IRAK 541 807 - -
Rops3g01748 852 FunFam Uncharacterized protein 511 610 - -
Rops3g01748 852 SUPERFAMILY Protein kinase-like (PK-like) 519 831 IPR011009 -
Rops3g01748 852 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 796 - -
Rops3g01748 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 146 - -
Rops3g01748 852 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Rops3g01748 852 Gene3D Phosphorylase Kinase; domain 1 509 610 - -
Rops3g01748 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 180 IPR036426 -
Rops3g01748 852 ProSiteProfiles Protein kinase domain profile. 535 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01748 852 Pfam D-mannose binding lectin 71 175 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01748 Rops-Chr3 29622003 29626062 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01748 488 821 Receptor kinase-like Gene Family AT4G23190 55.030 2.14e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01748 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01748 - - pvy:116138471 897.501