Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01746 ATGAATAATGTTAGAATGTTACCAATCTGCTCTCTTTTATTTATCTTCATGAGAACCACCACTTCACTAGACACTATTGTTCCAGGTCAATCCATCCTATATCATGAGACATTAGTTTCAGCCTCTGCTGTTTTTGAACTTGGGTTTTTCAGACCTGGAAATTCTAATAGTCTATATGTTGGAATATGGTACAAGGATTCTCCTTCAACAGTGGTATGGGTGGCCAACAGAGAAGCACCACTTTACAACACATCTGGAGTTTTACAAATCAATGATCAAGGAGCTCTTGTCCTTCTTAGTGACACAGAGAGCATTGCCTGGTCATCCAATATCTCAGGCAAAGCAGGGAACCCAACTGCACAGCTCTTGGACTCCGGGAATCTTGTTGTTAGAAATGGACATGACAATAACCTTGATAATCTCTTATGGCAGAGTTTTGATTATCCATGTGATACATTATTGCCGGGAATGAAGTTTGGATGGAACTTAGAAACAGGACTAGACAGGTTTCTGTCATCTTGGAAAAGTGCAAATGATCCTGGTCAGGGTGACTACATAGTTAAAATAGACATTCGAGGCTACCCACAAGAAGTTTTTCTGAAAGGAAATGTTATAAAGGCTAGAGCAGGATTTTGGAATGGCTTTAATTCTACAGGAAATCTATCAATAATACATCCTAATTTAATATTTAGTGTAGAATTTGTGTTCAATGAGAAAGAAGTATATTTTAAGTATGAGACTTCGAATAGATCGGTTTTCTCAAGGTTTGTTCTCTCCACTTCAGGCATTGGGCAGACTTTAGTCTGGACAAGTCAAACAAGCAGCTGGGATGTAATCGCGATAAACCTAGATCAGTGCGTAAATTATGCTTTGTGTGGTGCATATTCAATATGCAATGTTAGTAACGATGCTCCTGTCTGTGCATGCCTGAAAGGTTTTGTACCCAAACATCCAGAAGAATGGAATATGTCACATTGGTCTAACGGCTGCATTCGCAGCATTCCACTGGATTGTAATAACAACGATGGCTTCGTGAAGTACACGGGTTTGAAGTTACCAGACACTTCATCTTCATGGTATAACAAGACCATGGACCTTATGGAATGCCAGAAATCTTGTCTGCATAACTGTTCCTGTTCAGCATATGCAAATTTTGATGTGCGAGGTGGAGGAAGTGGCTGCGTTCTTTGGTTTGATGATCTGATTGACATGAGTCAATTGTCTCAAAGGATACAGGACCTTTATGTACGAGTTCCTGCTTCGGAGCTAGGTTCAAACATAACGAATGAAACAGAACCCGGGAATGCATTTGGTGGGCATGAAAACAAGCAGAGGGATCTACTTCTAATTGTTCTACCGATCTCATTTCTAACATTGCTTATCTTGGTGGGCCTATTCGTTTACTGGATTAGAAGGCAAAGGGGGAAAGGGGAAGATTTGTTACCTTTTGAAGTAGGCATGAGCATGAAAGTTAAAGACTCGGAGTTTACTGAAGCGGAAAAGGGTGCAAAGGTTAAGAAGAAGGAAGTCAAATTGCCATTATTCAGTTTTGCAAGTGTTTCGGCAGCAACTAATAAATTTTCAGATGCAAATAAACTTGGTGAAGGTGGCTTTGGACCTGTTTACAAGGGTAAATTATTGAATGGGGATGAGGTTGCCGTAAAGAGGCTATCCCGAAGATCTAGTCAAGGATGGGTGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACACAATAATCTTGTTCGACTTCTGGGCTGTTGCATTGATCGAAATGAAAAGATGCTGATATATGAATTTATGCCTAATAAAAGCTTGGATTGCTTTCTTTTTGATACAACAAAAAGAAGGATGCTGGATTGGGGAACGCGAGTTCGGATAATTGATGGGATTGCCCAAGGACTCCTTTATCTTCATCAATATTCCAGGTTTCGGATCATTCATCGAGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTAGAGAGAATGAACTTCAAGGAAATACAAATCGGATAGTTGGAACTTATGGCTACATGTCCCCTGAATATGCCATGAAAGGCCTTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTCCTTCTGTTAGAGATTATAAGTGGCAAGAAGAATACAGGTTTTTATCAAACAAAGTCCCTCAGTCTTCTCGGATATGCTTGGGATCTATGGACAAGCAATTCGGGAGTAGACCTGATGGATCCAGCACTGGAAGATATTTCCAATAAGCATGTAGTGCCGAGATATGTGAACATAGGACTTCTCTGTGTTCAAGAAAGTCCAGCAGATAGACCAACCATGTCTGATGTGGTATCAATGATTGGCAATGACACTGCAGCCCTTCCTTGTCCGAAGCCACCTGCATTTCTAAATGTGAGTGATAATGAAAATTCAAGATTTGCCAGAAACATGGAAGAAAATTTTTCTGTGAATCTTATCACAGATTCACTTGTGGAAGCAAGATGA 2535 0.3984 MNNVRMLPICSLLFIFMRTTTSLDTIVPGQSILYHETLVSASAVFELGFFRPGNSNSLYVGIWYKDSPSTVVWVANREAPLYNTSGVLQINDQGALVLLSDTESIAWSSNISGKAGNPTAQLLDSGNLVVRNGHDNNLDNLLWQSFDYPCDTLLPGMKFGWNLETGLDRFLSSWKSANDPGQGDYIVKIDIRGYPQEVFLKGNVIKARAGFWNGFNSTGNLSIIHPNLIFSVEFVFNEKEVYFKYETSNRSVFSRFVLSTSGIGQTLVWTSQTSSWDVIAINLDQCVNYALCGAYSICNVSNDAPVCACLKGFVPKHPEEWNMSHWSNGCIRSIPLDCNNNDGFVKYTGLKLPDTSSSWYNKTMDLMECQKSCLHNCSCSAYANFDVRGGGSGCVLWFDDLIDMSQLSQRIQDLYVRVPASELGSNITNETEPGNAFGGHENKQRDLLLIVLPISFLTLLILVGLFVYWIRRQRGKGEDLLPFEVGMSMKVKDSEFTEAEKGAKVKKKEVKLPLFSFASVSAATNKFSDANKLGEGGFGPVYKGKLLNGDEVAVKRLSRRSSQGWVELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDCFLFDTTKRRMLDWGTRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFRENELQGNTNRIVGTYGYMSPEYAMKGLFSIKSDVFSFGVLLLEIISGKKNTGFYQTKSLSLLGYAWDLWTSNSGVDLMDPALEDISNKHVVPRYVNIGLLCVQESPADRPTMSDVVSMIGNDTAALPCPKPPAFLNVSDNENSRFARNMEENFSVNLITDSLVEAR* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01746 844 Pfam PAN-like domain 338 404 IPR003609 -
Rops3g01746 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 180 IPR036426 -
Rops3g01746 844 CDD PAN_AP_plant 335 419 - -
Rops3g01746 844 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Rops3g01746 844 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Rops3g01746 844 CDD B_lectin 36 149 IPR001480 -
Rops3g01746 844 Gene3D Phosphorylase Kinase; domain 1 501 602 - -
Rops3g01746 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 418 - -
Rops3g01746 844 Gene3D Hepatocyte Growth Factor 335 416 - -
Rops3g01746 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Rops3g01746 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 805 - -
Rops3g01746 844 SMART serkin_6 527 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01746 844 Pfam Protein tyrosine and serine/threonine kinase 531 796 IPR001245 GO:0004672|GO:0006468
Rops3g01746 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 788 - -
Rops3g01746 844 Gene3D Transferase(Phosphotransferase) domain 1 603 803 - -
Rops3g01746 844 SUPERFAMILY Protein kinase-like (PK-like) 511 820 IPR011009 -
Rops3g01746 844 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Rops3g01746 844 Pfam D-mannose binding lectin 70 175 IPR001480 -
Rops3g01746 844 FunFam Uncharacterized protein 503 602 - -
Rops3g01746 844 ProSiteProfiles Protein kinase domain profile. 527 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01746 844 Gene3D - 18 146 IPR036426 -
Rops3g01746 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 146 - -
Rops3g01746 844 SMART ntp_6 339 418 IPR003609 -
Rops3g01746 844 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Rops3g01746 844 SMART blect_4 29 149 IPR001480 -
Rops3g01746 844 CDD STKc_IRAK 533 797 - -
Rops3g01746 844 PIRSF SRK 1 844 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01746 Rops-Chr3 29528976 29532986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01746 447 813 Receptor kinase-like Gene Family AT4G23190 53.209 4.40e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01746 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01746 - - pvy:116138469 910.983