Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01742 ATGAATCAATCTATCCGAGATGGTGAGACGTTAGTTTCAGCAGGTGGCACTTTTGAAGTGGGTTTCTTCAGCCCTGGAAATTCCAAAGGTCGATACTTGGGTATATGGTACAGAAATATCTCCCCAGTAAAAGTAGTATGGGTGGCAAACCGAGAAACACCACTTCACAACAAATCAGGAGTTTTAAAAGTGAATGAAAAGGGGGCTCTCCAGCTTCTCAATAGCGAAAACAACACTGTTTGGTTTTCCAATATATCGAGCAAAGTAGCAAGTAATCCAATTTTACAGCTCCTGGACTCGGGAAATCTTGTGGTGAAGAATGGACAAGAGATTAACGAGGATAATTTTATGTGGCAAAGTTTTGATCATCCTTGTCATACATTATTGTCGGGGATGAAGCTTGGATGGAACTTAGGAACCGGTCTAAATAGATTTCTAACATCTTGGAGAACAGAAGACGATCCTGCTGTGGGAGAGTATTCTGTGAAAATTGACCTCAGAGGATATCCACAGTATATTGTACTAAAGGGGCCTTTTATAAAGACTAGAGTAGGATCATGGAATGGCCTTGGTTTCATGGGATATCCAATTCCCCAACACAAAGAAATAGATAGACTTGAATTTGTGTTGAATGAAAAAGAGGTGTATTTTATGTTTGAACTCTTGGATGGATCATCTGTCTTCATGTATTGGTTGACCCTTTCAGGCAACCGTCAGAGTTTGGTTAGGATAAATCAAAGAAGAAGCCCAGAGGTTATCACACATGAAACAGACGATTGTGAAAACTATGCCTTATGTGGTGCAAATTCTATATGCAAAATGGATGGTAAATCTTCAACTTGTGAATGCCTGAAAGGATTTGTGCCCAAGTTTTCTGAAGAATGGAATATGTCGTATTGGTCTGGTGGCTGTGTTCGAAAGACCAAGTTGGATTGTAATTATAAAGATGGTTTCTCGAAATACGAAAATATGAAATTACCAGACACATCTTCTTCATGGTATAGTAAGACCATAGACCTCGAGGAATGTCAGAAGTTGTGTCTAAAAAATTGTTCTTGTACATCCTATGCAAATTTGGATATCCGTGATGGAGGAAGTGGCTGTTTACTTTGGTTTCATGATCTGATTGACTTGAGGCTATTTTCTCAATGGGGACAAGATCTTTATGTCAGAGTCCATGCTTCAGAGCTAGATTATGTTGCAGTCAATGGCCATGGAAAAAACAAGAAAAAGCTGGTAGGAATCACAGTCGGTGTGATTATTTTTGGATTAACTGCATGGGTAACAGGAATTGTTTATAGCAAGCATTTTAAAAATAAAATGAGGAAGGAAGATACTGATATGCCAAAATTTGATTTCCTAACCATAGTAAAAGCCACAGAAAACTTTTCAAGTGGTAACAAACTGGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAACACTAAAGGATGGGCAAGAGATAGCCGTGAAAAGGCTTTCAAAGAAGTCTAGGCAAGGATTAGAGGAGTTAAAAAATGAAGTGGCATTGATTGCCAAACTTCAACACCGTAATCTTGTCAAGCTTATAGGTTGCTGCATTGAAGGAGAAGAAAAAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGACTATTTTATTTTTGATGAATCTAGAAGGAAGTTGGTAGATTGGCATAAGCGTTTCAACATTATTGGTGGCGTTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGATTGAGGATTGTTCATAGGGATTTGAAGACCAGCAATATTCTACTAGATGCAAATTTGGATCCTAAAATATCAGACTTTGGCCTTGCTCGAGCATTTTGGGGAGATCAAGTTGAGGCAAACACAAATAAGGTGGCTGGAACATATGGTTACATGCCTCCCGAGTATGCTGCTCAAGGGCATTTCTCAATGAAATCAGATGTCTTTAGTTATGGTGTTATAATACTAGAGATTGTAAGTGGAAAAAAGAATAGGGATTTTTCAGATGCAGAACATTGCCTTAATCTTCTTGGACACGCATGGAGACTATGGACTGAAGAGAGGGCATTGGAACTACTGGATGGAATGTTAAGGGAAAGATTCATACCTTTTGAAGTCATACGATGCATACATGTCGGTCTGTTATGCGTGCAACAAAGACCAGAAGATAGACCAGACATATCATCAGTGGTTCTAATGTTGAATGGAGAGAAATTATTGGCCAGTCCAAAGGTTCCTGGTTTTTACATAGAGCAAGATGTTAAACCCGAAGCAGATCTATTGCCTGCAAATAGTTAA 2298 0.3895 MNQSIRDGETLVSAGGTFEVGFFSPGNSKGRYLGIWYRNISPVKVVWVANRETPLHNKSGVLKVNEKGALQLLNSENNTVWFSNISSKVASNPILQLLDSGNLVVKNGQEINEDNFMWQSFDHPCHTLLSGMKLGWNLGTGLNRFLTSWRTEDDPAVGEYSVKIDLRGYPQYIVLKGPFIKTRVGSWNGLGFMGYPIPQHKEIDRLEFVLNEKEVYFMFELLDGSSVFMYWLTLSGNRQSLVRINQRRSPEVITHETDDCENYALCGANSICKMDGKSSTCECLKGFVPKFSEEWNMSYWSGGCVRKTKLDCNYKDGFSKYENMKLPDTSSSWYSKTIDLEECQKLCLKNCSCTSYANLDIRDGGSGCLLWFHDLIDLRLFSQWGQDLYVRVHASELDYVAVNGHGKNKKKLVGITVGVIIFGLTAWVTGIVYSKHFKNKMRKEDTDMPKFDFLTIVKATENFSSGNKLGEGGFGPVYKGTLKDGQEIAVKRLSKKSRQGLEELKNEVALIAKLQHRNLVKLIGCCIEGEEKMLIYEYMPNKSLDYFIFDESRRKLVDWHKRFNIIGGVARGLLYLHQDSRLRIVHRDLKTSNILLDANLDPKISDFGLARAFWGDQVEANTNKVAGTYGYMPPEYAAQGHFSMKSDVFSYGVIILEIVSGKKNRDFSDAEHCLNLLGHAWRLWTEERALELLDGMLRERFIPFEVIRCIHVGLLCVQQRPEDRPDISSVVLMLNGEKLLASPKVPGFYIEQDVKPEADLLPANS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01742 765 Pfam D-mannose binding lectin 45 150 IPR001480 -
Rops3g01742 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 311 392 - -
Rops3g01742 765 SUPERFAMILY Protein kinase-like (PK-like) 448 734 IPR011009 -
Rops3g01742 765 Pfam Protein tyrosine and serine/threonine kinase 465 731 IPR001245 GO:0004672|GO:0006468
Rops3g01742 765 CDD PAN_AP_plant 308 392 - -
Rops3g01742 765 FunFam - 539 743 - -
Rops3g01742 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Rops3g01742 765 CDD B_lectin 2 124 IPR001480 -
Rops3g01742 765 Gene3D Transferase(Phosphotransferase) domain 1 539 742 - -
Rops3g01742 765 SMART serkin_6 463 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01742 765 ProSiteProfiles Bulb-type lectin domain profile. 1 118 IPR001480 -
Rops3g01742 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 429 538 - -
Rops3g01742 765 ProSiteProfiles EGF-like domain profile. 256 293 IPR000742 -
Rops3g01742 765 PIRSF SRK 1 761 IPR024171 GO:0004674
Rops3g01742 765 ProSiteProfiles PAN/Apple domain profile. 312 393 IPR003609 -
Rops3g01742 765 Gene3D Phosphorylase Kinase; domain 1 427 538 - -
Rops3g01742 765 Gene3D Hepatocyte Growth Factor 309 387 - -
Rops3g01742 765 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01742 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 155 IPR036426 -
Rops3g01742 765 Pfam PAN-like domain 312 378 IPR003609 -
Rops3g01742 765 SUPERFAMILY Hairpin loop containing domain-like 313 384 - -
Rops3g01742 765 SMART ntp_6 313 392 IPR003609 -
Rops3g01742 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 121 - -
Rops3g01742 765 SMART blect_4 2 124 IPR001480 -
Rops3g01742 765 Gene3D - 1 121 IPR036426 -
Rops3g01742 765 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 721 - -
Rops3g01742 765 CDD STKc_IRAK 469 736 - -
Rops3g01742 765 Pfam S-locus glycoprotein domain 183 291 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01742 Rops-Chr3 29415980 29419338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01742 447 751 Receptor kinase-like Gene Family AT4G23140 57.051 1.53e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01742 PK_Tyr_Ser-Thr 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01742 - - gmx:100790261 1104.35