Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01730 ATGGAGGGCTTTAGAAGGCTCGGTTTGTTCATTTTGTTTCTCTCCTTAATAAGCATGTCCTCCACATTGGACATGATTACTCCAAGCCAACCCATCCGAGATGGTAAGAATGAAAATGAAACTCTTGTTTCAACAAATGGAACCTTTGAAGCGGGATTCTTCAGCCCTGAAAATTTAAATACCCGTTACTTTGGAATTTGGTACAAAAACATTTCTCCTAAAACATTTGTATGGGTAGCCAACAGAGAAACACCACTAAATGACCACTCAGGAGTTTTGGAATTAGACAGTGATCGAGGAATTCTTAGAATTATGGATGGTACAGGAGCCAATATCTGGTCCTCAAATGCATCAAAGACAGCAGAGAAGCCAGTTGTGGTGCAGCTGTTGGAATCAGGAAACATGGTTGTGAAAGATGGATATAACTCGAAGGGTCTTTTATGGGAGAGCTTTGATTATCCTGGTGACACTTTACTCCCAGGAATGAAAATTGGAAGCAACTTAAAAACAGGTCAAAATTGGACTCTTAGATCTTGGAAATCCCTGCAAGATCCTACTCCAGGTAAATTTTCATTTCAAATTGATACTCATGGCCTTCCTCAATTAGTTATTACACAGGAGGGTACTACAGTTTACAGACCAGGGTCATGGAATGGGCTGAGCATCACAGGAATCCCTCAACAATTAAATGACCAAGTGGTTAAACCTCTTTTTGTAACAAATGGAGAGGAAGTCTTTTATGAGATTGAACTCAAGAATAGTTCAACCATCATGAGAAGCAGACTGGCTCCAGAAGGCTATCAAGTACATTTAATTTGGTCAGAACAGACAAGGCAATGGGTTATGAGATACCCTGGTTCATTTGATCAGTGTGAAAGATATGCCTTGTGTGGTGCAAATACTAATTGCAATGGTGGTAGGACTCAAAACTGTGAATGCTTGACAGGATTCAAGGCTAACTCAGAAGATTTAGCTGGTAAGCTTGAGTGTGTTAGAACCACCCCAATAGACTGTAAGAAAAGAGATTATTTTTATAAGTATGAGGGAATGAAATTGCCAGACACATCTTCATCATGGTATAATAAGACCATTAGTCTACAGGAATGTGAGAAATTATGTTTGAGCAACTGTTCTTGTACTGCATATGCTAAATTGAATATCAGTGGTACTGGAAGTGGTTGCTTGCATTGGTTTTCTGACATTGTTGACATGAGGAAACTCCTTGTGGGAGGACAAGATTTTTATGTACGAGTGGCTACAGCTTCAGAACTAGATCACCGCTTCAACAAGAAGAAAATAGCAGGAATTGTGGTTGGCTGTACAATATTCATCATTGTATTTGGATTGATATTATGCATTGCGAAGAATAAAGTGATGCAGCCAGAAACAACTTATTGGAAGGATGAGAGAGAGAAGGATGACATTGATTTACCAACATTTGATTTTACAACCATCTCTAATGCCACAAATCACTTTTCACAAAGTAACAAATTGGGACAAGGTGGCTTTGGACCAGTGTACAAGGGCATATTACCAAGTGGGCAAGAGATTGCAGTTAAGAGGCTTTCTAAAACATCTGGACAAGGTTCGGAGGAGTTCAAAAATGAAGTCATGCTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTCAGCAAGAGGAGAAGTTATTGATTTATGAATTCATGCCAAACAGAAGCTTGGACATCTTTATTTTTGATTCAATGAGACGTAAGTTATTAAGTTGGGCTAAGCGATTTGAAATTATTAATGGAATTGCTCGAGGACTTCTGTATCTTCATCAAGACTCTAGACTAAAGATCATCCACAGGGATCTAAAAACCAGTAACGTTCTTCTTGATAATAATATGAGTCCAAAAATATCAGATTTTGGTATGGCTAGAACATTTGGACTAGATCAAGATGAAGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTGTTCATGGATCATTTTCAGTCAAATCTGATGTCTTCAGCTTTGGTGTGATAGTACTAGAGATAATCAGTGGGAGGAAGAACAGGGGATTTTCTGACCCACATCATCACCTTAATCTTCTTGGACATGCATGGAGTCTATGGATTGAAAAAAGGCCAATGGAACTTATGGATGACATAGTGGACAATTCAAGTACCGGTCCATCTGAAATATTAAGATATATTCACATTGGTTTGTTATGTGTACAACAAAGACCAGAGGATAGGCCAAACATGTCATCTGTGGTTTTAATGTTGAATGGTGAAAAGTTACTGCCTGAGCCAAGTCAACCTGGGTTCTACACAGGAAAAGATCATCACCCAGTTCAGACAGATTCTTCAAAAAATGGTGATGTATATTCGTTCAATGAAATTTCAAACTCATTGATGGAGGCAAGATAA 2436 0.3851 MEGFRRLGLFILFLSLISMSSTLDMITPSQPIRDGKNENETLVSTNGTFEAGFFSPENLNTRYFGIWYKNISPKTFVWVANRETPLNDHSGVLELDSDRGILRIMDGTGANIWSSNASKTAEKPVVVQLLESGNMVVKDGYNSKGLLWESFDYPGDTLLPGMKIGSNLKTGQNWTLRSWKSLQDPTPGKFSFQIDTHGLPQLVITQEGTTVYRPGSWNGLSITGIPQQLNDQVVKPLFVTNGEEVFYEIELKNSSTIMRSRLAPEGYQVHLIWSEQTRQWVMRYPGSFDQCERYALCGANTNCNGGRTQNCECLTGFKANSEDLAGKLECVRTTPIDCKKRDYFYKYEGMKLPDTSSSWYNKTISLQECEKLCLSNCSCTAYAKLNISGTGSGCLHWFSDIVDMRKLLVGGQDFYVRVATASELDHRFNKKKIAGIVVGCTIFIIVFGLILCIAKNKVMQPETTYWKDEREKDDIDLPTFDFTTISNATNHFSQSNKLGQGGFGPVYKGILPSGQEIAVKRLSKTSGQGSEEFKNEVMLIAKLQHRNLVKLLGCSIQQEEKLLIYEFMPNRSLDIFIFDSMRRKLLSWAKRFEIINGIARGLLYLHQDSRLKIIHRDLKTSNVLLDNNMSPKISDFGMARTFGLDQDEANTNRVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFSDPHHHLNLLGHAWSLWIEKRPMELMDDIVDNSSTGPSEILRYIHIGLLCVQQRPEDRPNMSSVVLMLNGEKLLPEPSQPGFYTGKDHHPVQTDSSKNGDVYSFNEISNSLMEAR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01730 811 SMART blect_4 33 154 IPR001480 -
Rops3g01730 811 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Rops3g01730 811 CDD PAN_AP_plant 334 419 - -
Rops3g01730 811 ProSiteProfiles Zinc finger SWIM-type profile. 362 405 IPR007527 GO:0008270
Rops3g01730 811 MobiDBLite consensus disorder prediction 773 796 - -
Rops3g01730 811 Gene3D Transferase(Phosphotransferase) domain 1 568 770 - -
Rops3g01730 811 Gene3D Hepatocyte Growth Factor 335 416 - -
Rops3g01730 811 Gene3D - 19 151 IPR036426 -
Rops3g01730 811 Gene3D Phosphorylase Kinase; domain 1 466 567 - -
Rops3g01730 811 Pfam PAN-like domain 338 404 IPR003609 -
Rops3g01730 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 151 - -
Rops3g01730 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Rops3g01730 811 ProSiteProfiles Protein kinase domain profile. 492 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01730 811 PIRSF SRK 4 811 IPR024171 GO:0004674
Rops3g01730 811 CDD STKc_IRAK 498 766 - -
Rops3g01730 811 SUPERFAMILY Protein kinase-like (PK-like) 477 764 IPR011009 -
Rops3g01730 811 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Rops3g01730 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 568 772 - -
Rops3g01730 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
Rops3g01730 811 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Rops3g01730 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 457 567 - -
Rops3g01730 811 SMART serkin_6 492 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01730 811 SMART ntp_6 339 418 IPR003609 -
Rops3g01730 811 Pfam Protein tyrosine and serine/threonine kinase 494 762 IPR001245 GO:0004672|GO:0006468
Rops3g01730 811 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 751 - -
Rops3g01730 811 CDD B_lectin 39 154 IPR001480 -
Rops3g01730 811 Pfam D-mannose binding lectin 75 180 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01730 Rops-Chr3 29216461 29220787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01730 434 779 Receptor kinase-like Gene Family AT4G23190 53.390 2.69e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g01730 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01730 - - gmx:100802416 1226.46