Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01723 ATGCCTGATGTTCCCATGCATGGGGTTACTGGAGGCATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCAATGCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGTGCTTTGGCTTCTACTCTGGCTAATGCTTCTCTAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAACAGTTGGAGCCAGAAAATGCTACCAAAGTGACAGGCATGCTTTTGGAGATGGACCAGACTGAAGTTCTGTACTTGCTCGAGTCGCCGGAGGCGCCACTCAATCCCAAGGCCAACAAAGAGAAAATGACCCACATTATGTTTGAAACTTTCAACGTGCCTGCCATGTATGTTGCCATTCAGGTTGTTTTGTCTTTGTATGCCAGTGGACGCACAACGGGTATTGTGCTTGGTTCTGGTGATGGTGTGAGCCACACGGTGCCCATGTATGAAGGCTATGCTCTTCCTCATGCGTTCCTTAGGTTGGACCTTGATGGTCATGATTTAACAGAGTACTTGATGAAGATTCTGACTAAGAGAGGATACTCTTTCACTACCACCACGGAACGGGAAATTGTACGTGATGTGAAGGAGAAATTAGCTTATATGGCCCTTGACCAGAACAATGAGCCCAAGAGACCATCATACAAGCCCCACATAATAGACCCACAACCACGAGTTATATGCAAGGAAGGAAGCCTGGTATGGTTGTGA 723 0.4758 MPDVPMHGVTGGMFSVPYDVGGMPMRDASLSQQIPIGALASTLANASLEQQRTMLGENLYPLVEQLEPENATKVTGMLLEMDQTEVLYLLESPEAPLNPKANKEKMTHIMFETFNVPAMYVAIQVVLSLYASGRTTGIVLGSGDGVSHTVPMYEGYALPHAFLRLDLDGHDLTEYLMKILTKRGYSFTTTTEREIVRDVKEKLAYMALDQNNEPKRPSYKPHIIDPQPRVICKEGSLVWL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01723 240 SMART actin_3 19 237 IPR004000 -
Rops3g01723 240 Pfam Poly-adenylate binding protein, unique domain 43 95 IPR002004 GO:0003723
Rops3g01723 240 Gene3D - 31 105 - -
Rops3g01723 240 SUPERFAMILY PABC (PABP) domain 12 95 IPR036053 GO:0003723
Rops3g01723 240 SUPERFAMILY Actin-like ATPase domain 133 219 IPR043129 -
Rops3g01723 240 FunFam Actin 12 101 123 - -
Rops3g01723 240 Gene3D Actin; Chain A, domain 4 178 226 - -
Rops3g01723 240 PANTHER ACTIN 93 216 IPR004000 -
Rops3g01723 240 SMART poly_2 47 109 IPR002004 GO:0003723
Rops3g01723 240 CDD NBD_sugar-kinase_HSP70_actin 94 161 - -
Rops3g01723 240 Pfam Actin 93 214 IPR004000 -
Rops3g01723 240 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 35 112 IPR002004 GO:0003723
Rops3g01723 240 SUPERFAMILY Actin-like ATPase domain 94 140 IPR043129 -
Rops3g01723 240 Gene3D - 125 177 - -
Rops3g01723 240 PRINTS Actin signature 102 115 IPR004000 -
Rops3g01723 240 PRINTS Actin signature 127 146 IPR004000 -
Rops3g01723 240 FunFam Actin, alpha skeletal muscle 124 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01723 Rops-Chr3 29114459 29115181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01723 94 213 Cytoskeleton Gene Families AT3G12110 85.833 1.55e-68 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01723 K10355 K05692 smin:v1.2.014253.t1 209.92