LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01713	ATGGCTCGTACAAAGCAAACTGCTCGTAAGTCAACTGGTGGAAAAGCGCTCAGGAAGCAGCTTGCCACCAAGGTTGCACGTAAGTCTGCACCAACTACTGGCGGTGTGAAGAAGCCACATCGTTACCGTCCTTCATGGGGTGGTGCAAAGCATGAACCTGGTGGAAAGGATGATGGTAGGAAGATGCACCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCAAGGAGCTTACCATGGAACGACTATGAAATGGATGTTATTCATTCGTTGCAGTTAATACCAAGGAATGCATTCAGAGATACAGAGAATCACTGTTCATATGAGCACTCCAGCCTCAACTAA	351	0.4672	MARTKQTARKSTGGKALRKQLATKVARKSAPTTGGVKKPHRYRPSWGGAKHEPGGKDDGRKMHPRSSFKAFLEVVKARSLPWNDYEMDVIHSLQLIPRNAFRDTENHCSYEHSSLN*	117

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01713	116	Pfam	Phytochrome region	45	101	IPR013515	GO:0006355\|GO:0009584
	Rops3g01713	116	PRINTS	Histone H3 signature	3	17	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Rops3g01713	116	PRINTS	Histone H3 signature	17	31	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Rops3g01713	116	PRINTS	Histone H3 signature	34	55	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Rops3g01713	116	SUPERFAMILY	Histone-fold	2	45	IPR009072	GO:0046982
	Rops3g01713	116	Gene3D	Histone, subunit A	2	74	IPR009072	GO:0046982
	Rops3g01713	116	MobiDBLite	consensus disorder prediction	1	63	-	-
	Rops3g01713	116	SUPERFAMILY	GAF domain-like	42	101	-	-
	Rops3g01713	116	PANTHER	HISTONE H3	1	45	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Rops3g01713	116	MobiDBLite	consensus disorder prediction	45	63	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01713	Rops-Chr3	28470246	28470744	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g01713	46	105	Histidine Kinase Gene Family	AT2G18790	70.000	1.38e-26	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01713	K12120		-	sspl:121741481	119.398