Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01712 ATGCACCACGTTGATTGGTGGTCTCATAATCCCTTAGCTTGGGGTATCACATGTACCCACGACCATGGGTCTCCACAAGAAGACACAGATTCCTCAACATGCAAGGCTTGCATTTCTGCCATGAAACTCATAACTTGTGTTGCTCCTTGCTCCCACATAGGTCCAAGTTACGTGAACAAGTTCATGATCTGTGAAAGCTGGCAAGGAGTGGTTCAAGTTCATGGACATGTAGAGTGCATTGGTGAACTCGAGTTAACACATCATGACTTCCATTGCAAGGGTGTCTACGAGATTGACGGTATTGGTGCTATGCCTGTCGGACGTGTTGAGACCGGTACCTTGAAGCCTAGTATGGTTGTGACTTTCGGTCCCATTGGGTTGACAACCGAAGTTAAGTCTGTGGAGATGCACCACGAGGCTCTCCAAGAAGCTCTTCCAGGTGACAATGTGGGATCCAACGTGAAGAACGTTGCAGTCAACAAGGATCTCAAGCGTGGTTTTGTGGCATCCAACTCAAAGGATAACCCTGCCAAGGAAGCTGCCAACTTCACATCCCAAGATTGA 564 0.4805 MHHVDWWSHNPLAWGITCTHDHGSPQEDTDSSTCKACISAMKLITCVAPCSHIGPSYVNKFMICESWQGVVQVHGHVECIGELELTHHDFHCKGVYEIDGIGAMPVGRVETGTLKPSMVVTFGPIGLTTEVKSVEMHHEALQEALPGDNVGSNVKNVAVNKDLKRGFVASNSKDNPAKEAANFTSQD* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01712 187 CDD EF1_alpha_II 93 175 - -
Rops3g01712 187 MobiDBLite consensus disorder prediction 168 187 - -
Rops3g01712 187 Pfam Elongation factor Tu domain 2 104 168 IPR004161 GO:0005525
Rops3g01712 187 SUPERFAMILY Translation proteins 94 175 IPR009000 -
Rops3g01712 187 PANTHER ELONGATION FACTOR 1 ALPHA 91 186 - -
Rops3g01712 187 FunFam Elongation factor 1-alpha 89 171 - -
Rops3g01712 187 Gene3D Translation factors 88 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01712 Rops-Chr3 28468794 28469483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01712 95 186 Eukaryotic Initiation Factors Gene Family AT5G60390 82.609 1.56e-44 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01712 K03231 - mus:103969643 162.54